Difference between revisions of "Priority List of Topics"
From GcatWiki
(→[http://gcat.davidson.edu/spring2010/project2/ perl scripts for genome analysis]) |
(→[http://gcat.davidson.edu/spring2010/project2/ perl scripts for genome analysis]) |
||
| Line 1: | Line 1: | ||
==[http://gcat.davidson.edu/spring2010/project2/ perl scripts for genome analysis]== | ==[http://gcat.davidson.edu/spring2010/project2/ perl scripts for genome analysis]== | ||
| − | + | [http://dl.dropbox.com/u/4936834/PWM_scan.zip PWM Scan] - a perl script that scans a genome or long DNA sequence for motifs that fit into a specific position weight matrix's parameters. Includes a quicker scan and a longer scan that uses every possible window. | |
==Lauren== | ==Lauren== | ||
Revision as of 22:13, 31 January 2011
Contents
perl scripts for genome analysis
PWM Scan - a perl script that scans a genome or long DNA sequence for motifs that fit into a specific position weight matrix's parameters. Includes a quicker scan and a longer scan that uses every possible window.
Lauren
Glucose Metabolism
- Acid Invertase
Dylan
Myb Transcription Factors
Laura
rRNA Genes
Lexi
Puneet
Leland
Mitochondrial/Chloroplast Separation
Will
Jared
- Methyltransferase
- Histone acetyltransferase
Additional Possible Topics
Lignins
Pectins
Tanins
