Difference between revisions of "Project Priority List"
From GcatWiki
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*Website modules that take in parameters and have a tutorial (probably want a few frames in webpage that can load individually) | *Website modules that take in parameters and have a tutorial (probably want a few frames in webpage that can load individually) | ||
**At the end with the contig you compare them and also discuss the next steps of scaffolding (be sure to highlight the importance of having linker sequences) | **At the end with the contig you compare them and also discuss the next steps of scaffolding (be sure to highlight the importance of having linker sequences) | ||
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#Make the website to show changes in assembly based on changes in... kmer length | #Make the website to show changes in assembly based on changes in... kmer length | ||
Revision as of 16:06, 13 June 2011
Genome Assembly
- Website modules that take in parameters and have a tutorial (probably want a few frames in webpage that can load individually)
- At the end with the contig you compare them and also discuss the next steps of scaffolding (be sure to highlight the importance of having linker sequences)
- Make the website to show changes in assembly based on changes in... kmer length
- Effect of using 1/2 reads -> lowering coverage
- Effect of not cleaning reads
- Tutorial
- Genome comparison
- dotplot to visually compare contigs - program automatically rearranges all contigs of one to get as close to diagonal line as possible
- Effect of OLC vs de Bruijn - too technical?
- Scaffolding
