Project Priority List

Genome Assembly

• Website modules that take in parameters and have a tutorial (probably want a few frames in webpage that can load individually)
  • At the end with the contig you compare them and also discuss the next steps of scaffolding (be sure to highlight the importance of having linker sequences)

1. Make the website to show changes in assembly based on changes in... kmer length
2. Effect of using 1/2 reads -> lowering coverage
3. Effect of not cleaning reads
4. Tutorial
5. Genome comparison
   • dotplot to visually compare contigs - program automatically rearranges all contigs of one to get as close to diagonal line as possible
6. Effect of OLC vs de Bruijn - too technical?
7. Scaffolding