Difference between revisions of "Ribozyme vesicles"

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(Experimental Design)
(Experimental Design)
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== Experimental Design ==
 
== Experimental Design ==
 
A unique and beneficial aspect of fatty acid vesicles is that they have autocatalytic growth and can repeatedly divide on their own. The first issue addressed is to create membranes that are stable but can allow passive diffusion of ions and substrates in and out of the vesicle.  The reason that this aspect of the protocell is so essential is because the formation of RNA catalysts requires the addition of magnesium ions to create the tertiary structure of the ribozyme. To accomplish this goal, researchers observed the effects of magnesium on the stability and permeability of vesicles consisting of fatty acids known as myristoleic acid (MA and glycerol monomyristoleate (GMM). Thus, they experimented with different ratios of MA to GMM to increase tolerance of Mg2+ in vesicles and allow for passive diffusion.  
 
A unique and beneficial aspect of fatty acid vesicles is that they have autocatalytic growth and can repeatedly divide on their own. The first issue addressed is to create membranes that are stable but can allow passive diffusion of ions and substrates in and out of the vesicle.  The reason that this aspect of the protocell is so essential is because the formation of RNA catalysts requires the addition of magnesium ions to create the tertiary structure of the ribozyme. To accomplish this goal, researchers observed the effects of magnesium on the stability and permeability of vesicles consisting of fatty acids known as myristoleic acid (MA and glycerol monomyristoleate (GMM). Thus, they experimented with different ratios of MA to GMM to increase tolerance of Mg2+ in vesicles and allow for passive diffusion.  
Table 1. MgCl2 Tolerance of Simple Vesicles
 
  
MA:GMM ratio
+
{|
 
+
| MA:GMM ratio || 2  
[MgCl2] tolerated, assayed by dye leakagea (mM)
+
|-
 
+
| 3 || 4
[MgCl2] at turbidity changeb (mM)
+
|-
 
+
| 5 || 6
1:0
+
|-
 
+
| 5 || 6  
0.5
+
|}
 
 
1
 
 
 
4:1
 
 
 
2
 
 
 
3
 
 
 
2:1
 
 
 
4
 
 
 
6
 
 
 
a Dye leakage was assessed <1 h after addition of MgCl2, and onset of leakage defined the maximum [MgCl2] tolerated.b Turbidity change was visible as a sudden increase in the opacity of the solution.
 
  
 
http://pubs.acs.org/isubscribe/journals/jacsat/127/i38/figures/ja051784pf00001.gif
 
http://pubs.acs.org/isubscribe/journals/jacsat/127/i38/figures/ja051784pf00001.gif

Revision as of 14:51, 6 December 2007

Goals

  • Create the "simplest possible protocell" capable of having a self-replicating informational molecule and a mechanism for spatial localization such as compartmentalization
  • Use membrane boundary that can grow and divide with being too complex and that can allow passive diffusion of ion and substrates
  • Encapsulation of catalytic (self-replicating) RNA molecules within self-replicating membrane vesicles.

Experimental Design

A unique and beneficial aspect of fatty acid vesicles is that they have autocatalytic growth and can repeatedly divide on their own. The first issue addressed is to create membranes that are stable but can allow passive diffusion of ions and substrates in and out of the vesicle. The reason that this aspect of the protocell is so essential is because the formation of RNA catalysts requires the addition of magnesium ions to create the tertiary structure of the ribozyme. To accomplish this goal, researchers observed the effects of magnesium on the stability and permeability of vesicles consisting of fatty acids known as myristoleic acid (MA and glycerol monomyristoleate (GMM). Thus, they experimented with different ratios of MA to GMM to increase tolerance of Mg2+ in vesicles and allow for passive diffusion.

MA:GMM ratio 2
3 4
5 6
5 6

http://pubs.acs.org/isubscribe/journals/jacsat/127/i38/figures/ja051784pf00001.gif

Results

Conclusions and Further Experiments


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