Difference between revisions of "TRNA Genes Check List 2009"
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Strand=Plus/Plus | Strand=Plus/Plus | ||
| − | '''tRNA 644031821: tRNA-Gly''' | + | '''tRNA 644031821: ''1980512..1980582 (+) (71bp)'': tRNA-Gly''' |
Blastn results in the nr/nt database showed the following matches: | Blastn results in the nr/nt database showed the following matches: | ||
[http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=nucleotide&dopt=GenBank&RID=9RZFNDE6014&log%24=nucltop&blast_rank=6&list_uids=174713 Halobacterium volcanii Gly-tRNA-1A] | [http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=nucleotide&dopt=GenBank&RID=9RZFNDE6014&log%24=nucltop&blast_rank=6&list_uids=174713 Halobacterium volcanii Gly-tRNA-1A] | ||
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Strand=Plus/Plus | Strand=Plus/Plus | ||
| − | '''tRNA 644031874:''2032528..2032601 (-) (74bp)'': tRNA-Val''' | + | '''tRNA 644031874: ''2032528..2032601 (-) (74bp)'': tRNA-Val''' |
Megablast results using the nr/nt database gave the following match: | Megablast results using the nr/nt database gave the following match: | ||
[http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=nucleotide&dopt=GenBank&RID=9S07YKWK01S&log%24=nucltop&blast_rank=4&list_uids=174745 Halobacterium volcanii Val-tRNA-1] | [http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=nucleotide&dopt=GenBank&RID=9S07YKWK01S&log%24=nucltop&blast_rank=4&list_uids=174745 Halobacterium volcanii Val-tRNA-1] | ||
Revision as of 17:19, 31 August 2009
tRNA 644031717: tRNA-Val
Megablast results in the nr/nt database showed a match with the following statistics:
Halobacterium cutirubrum transfer RNA-Val (GAC)
S = 99.0 bits (53)
E-value = 2e-18
Query Coverage: 100%
Identities = 69/76 (90%)
Gaps = 3/76 (3%)
Strand=Plus/Plus
tRNA 644031821: 1980512..1980582 (+) (71bp): tRNA-Gly
Blastn results in the nr/nt database showed the following matches: Halobacterium volcanii Gly-tRNA-1A S = 69.8 bits (76) E-value = 1e-09 Query Coverage: 100% Identities = 58/71 (81%) Gaps = 0/71 (0%) Strand=Plus/Plus Halobacterium cutirubrum transfer RNA-Gly (GCC) S = 69.8 bits (76) E-value = 1e-09 Query Coverage: 100% Identities = 58/71 (81%) Gaps = 0/71 (0%) Strand=Plus/Plus
tRNA 644031874: 2032528..2032601 (-) (74bp): tRNA-Val
Megablast results using the nr/nt database gave the following match: Halobacterium volcanii Val-tRNA-1 S = 115 bits (62) E-value = 2e-23 Query Coverage: 100% Identities = 71/75 (94%) Gaps = 1/75 (1%) Strand=Plus/Plus
tRNA 644031888: 2048515..2048657 (+) (143bp): tRNA-Met
Megablast results using the nr/nt database showed the following match: Haloferax volcanii (Halobacterium volcanii) elongator methionine-accepting transfer RNA-Met gene S = 78.7 bits (42) E-value = 7e-12 Query Coverage: 29% Identities = 42/42 (100%) Gaps = 0/42 (0%) Strand=Plus/Plus
tRNA 644031915: 2079098..2079168 (+) (71bp): tRNA-Pro
Megablast results using the nr/nt database showed the following match: Halobacterium volcanii Pro-tRNA-2 S = 121 bits (65) E-value = 4e-25 Query Coverage: 100% Identities = 69/71 (97%) Gaps = 0/71 (0%) Strand=Plus/Plus
