Difference between revisions of "WEEK FIVE (February 13 - 17)"

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Every one needs to read two short summaries and then one or two really challenging papers. We are giving you two weeks to work on these papers as we start to get more specific and drill down into areas we need to master. After this week, we will begin to discuss what sorts of projects we can do. Also remember that we have the [http://gcat.davidson.edu/mediawiki-1.15.0/index.php/WEEK_THREE_(January_30_-_February_3) X-prize challenge] of using type IIs restriction enzymes for some clever new application.  
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Every one needs to read two short summaries and then one or two really challenging papers. We are giving you two weeks to work on these papers as we start to get more specific and drill down into areas we need to master. After this week, we will begin to discuss what sorts of projects we can do.  
  
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# Anne Condon. 2011. MOLECULAR PROGRAMMING: DNA and the Brain. Nature. Vol. 475: page 304-5.
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Also remember that we have the [http://gcat.davidson.edu/mediawiki-1.15.0/index.php/WEEK_THREE_(January_30_-_February_3) X-prize challenge] of using type IIs restriction enzymes for some clever new application.  
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# Adrian Cho. 2011. Physics: Scientific Link-Up Yields ‘Control Panel’ for Networks. Science. Vol. 332. page 777.  
 
  
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Here are the three new teams
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Everyone:
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# Anne Condon. 2011. [http://www.nature.com/nature/journal/v475/n7356/full/475304a.html MOLECULAR PROGRAMMING: DNA and the Brain]. Nature. Vol. 475: page 304-5.
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# Adrian Cho. 2011. [http://www.sciencemag.org/content/332/6031/777.full.pdf?sid=c6fee36c-5afc-4122-afb7-8c758685fbcf Physics: Scientific Link-Up Yields ‘Control Panel’ for Networks]. Science. Vol. 332. page 777.
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Here are the three new teams for week FIVE:<br><br>
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Team 1 MONDAY = Nishita, Alex and Ellen <br>
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[http://www.pnas.org/content/early/2010/03/03/0914439107.full.pdf+html '''Comprehensive genetic dissection of the magnetosome gene island reveals the step-wise assembly of a prokaryotic organelle''']<br>
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Dorothée Murata, Anna Quinlanb, Hojatollah Valic, and Arash Komeili <br>
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PNAS. 2011. Vol. 107(12):5593-8
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<center>''AND''</center>
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[http://jb.asm.org/content/189/13/4899.long '''Comparative genome analysis of four Magnetotactic bacteria reveals a complex set of group-specific genes implicated in magnetosome biomineralization and function.''']<br>
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Michael Richter ''et al.'' <br>
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J. Bacteriology. 2007. Vol. 189(13): page 4899.<br>
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Team 2 TUESDAY = Duke, Dancho and Ben <br>
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[http://www.nature.com/nature/journal/v473/n7346/pdf/nature10011.pdf '''Controllability of complex networks'''] <br>
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Yang-Yu Liu, Jean-Jacques Slotine, & Albert-La ́szlo ́ Baraba ́si<br>
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Nature. 2011. Vol. 473, page 167. <br>
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Team 3 WEDNESDAY = Becca, Erich, Kirsten <br>
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[http://www.nature.com/nbt/journal/v27/n12/pdf/nbt.1591.pdf '''Next-generation synthetic gene networks'''] <br>
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Timothy K Lu, Ahmad S Khalil & James J Collins<br>
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Nature Biotechnology. 2009. Vol. 27, page 1139.<br>
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'''Everyone FRIDAY 2:30 pm'''

Latest revision as of 14:17, 31 January 2012

Every one needs to read two short summaries and then one or two really challenging papers. We are giving you two weeks to work on these papers as we start to get more specific and drill down into areas we need to master. After this week, we will begin to discuss what sorts of projects we can do.

Also remember that we have the X-prize challenge of using type IIs restriction enzymes for some clever new application.

Everyone:

  1. Anne Condon. 2011. MOLECULAR PROGRAMMING: DNA and the Brain. Nature. Vol. 475: page 304-5.
  2. Adrian Cho. 2011. Physics: Scientific Link-Up Yields ‘Control Panel’ for Networks. Science. Vol. 332. page 777.

Here are the three new teams for week FIVE:

Team 1 MONDAY = Nishita, Alex and Ellen
Comprehensive genetic dissection of the magnetosome gene island reveals the step-wise assembly of a prokaryotic organelle
Dorothée Murata, Anna Quinlanb, Hojatollah Valic, and Arash Komeili
PNAS. 2011. Vol. 107(12):5593-8

AND

Comparative genome analysis of four Magnetotactic bacteria reveals a complex set of group-specific genes implicated in magnetosome biomineralization and function.
Michael Richter et al.
J. Bacteriology. 2007. Vol. 189(13): page 4899.


Team 2 TUESDAY = Duke, Dancho and Ben
Controllability of complex networks
Yang-Yu Liu, Jean-Jacques Slotine, & Albert-La ́szlo ́ Baraba ́si
Nature. 2011. Vol. 473, page 167.


Team 3 WEDNESDAY = Becca, Erich, Kirsten
Next-generation synthetic gene networks
Timothy K Lu, Ahmad S Khalil & James J Collins
Nature Biotechnology. 2009. Vol. 27, page 1139.


Everyone FRIDAY 2:30 pm

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