JP Mar 17 16
Wrote our first status report after our oral presentation on the 15th.
Want to map the whole transcriptome (relative expressions?) GO Slim terms and compare to gene of interest (relative expression?) GO Slim terms.
Wrote a code to extract gene id from a list of given gene names. Needed to manually search the gene id for the translated POUFs.
Generic GO term Mapper:
using the goslim_generic.obo from the OWLTools page: http://www.geneontology.org/ontology/subsets/goslim_generic.obo
Using generic human given by website
- this looks promising
Map2Slim option in OWLTools: "Given a GO slim file, and a current ontology (in one or more files), the Map2Slim script will map a gene association file (containing annotations to the full GO) to the terms in the GO slim.
- this doesn't work on school computers