Difference between revisions of "Mouse Charcot-Marie-Tooth type 2D RNAseq Project"

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(C. elegans nhr-25 experiments)
 
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This is the page for Bio343 at Davidson College, spring 2018.  
 
This is the page for Bio343 at Davidson College, spring 2018.  
  
more information to come
+
This group of 10 colleagues will investigate molecular causes for Charcot-Marie-Tooth type 2D disease as part of Davidson's [http://www.bio.davidson.edu/Courses/Bio343/LabMethods_2018.html Laboratory Methods in Genomics] class. They are collaborating with [https://www.jax.org/research-and-faculty/research-labs/the-burgess-lab Emily Spaulding and Rob Burgess] at Jackson Laboratory (JAX) in Bar Harbor Maine. 
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* [[Aiko Chamby]]
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* [[Itzy Cuellar]]
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* [[Vivienne Fang]]
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* [[Stephanie Hautamaa]]
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* [[Owen Koucky]]
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* [[Jonah Mische]]
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* [[Jenna Reed]]
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* [[Ky Roland]]
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* [[Malcolm Campbell]]
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* [[Debbie Thurtle-Schmidt]]
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Teams
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* [[Aiko and Jenna]]
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* [[Owen and Vivienne]]
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* [[Stephanie and Ky]]
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* [[Jonah and Itzy]]
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* [[Debbie and Malcolm]]
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== ''C. elegans'' ''nhr-25'' experiments ==
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'''Ready to upload to your Galaxy site:'''<br>
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our 1 =  her 60 = gene set for mapping<br>
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our 2 & 3 = her 51 = N2 #2 <br>
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our 4 & 5 = her 52 = ku217 #2<br>
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our 6 & 7 = her 53 = nhr-25(RNAi) #3<br>
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our 8 & 9 = her 54 = nhr-25(RNAi) #1<br>
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our 10 & 11 = her 55 = nhr-25(RNAi) #2<br>
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our 12 & 13 = her 56 = ku217 #3<br>
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our 14 & 15 = her 57 = N2 #3<br>
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our 16 & 17 = her 58 = N2 #1<br>
 +
our 18 & 19 = her 59 = ku217 #1<br>
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These values are ready for DESeq2 analysis. <br>

Latest revision as of 16:34, 16 March 2018

This is the page for Bio343 at Davidson College, spring 2018.

This group of 10 colleagues will investigate molecular causes for Charcot-Marie-Tooth type 2D disease as part of Davidson's Laboratory Methods in Genomics class. They are collaborating with Emily Spaulding and Rob Burgess at Jackson Laboratory (JAX) in Bar Harbor Maine.

Teams


C. elegans nhr-25 experiments

Ready to upload to your Galaxy site:
our 1 = her 60 = gene set for mapping
our 2 & 3 = her 51 = N2 #2
our 4 & 5 = her 52 = ku217 #2
our 6 & 7 = her 53 = nhr-25(RNAi) #3
our 8 & 9 = her 54 = nhr-25(RNAi) #1
our 10 & 11 = her 55 = nhr-25(RNAi) #2
our 12 & 13 = her 56 = ku217 #3
our 14 & 15 = her 57 = N2 #3
our 16 & 17 = her 58 = N2 #1
our 18 & 19 = her 59 = ku217 #1

These values are ready for DESeq2 analysis.