https://gcat.davidson.edu/GcatWiki/api.php?action=feedcontributions&feedformat=atom&user=JufearringtonGcatWiki - User contributions [en]2026-05-17T11:57:20ZUser contributionsMediaWiki 1.28.2https://gcat.davidson.edu/GcatWiki/index.php?title=File:PrimerSuggestions.doc&diff=13294File:PrimerSuggestions.doc2011-06-10T14:56:05Z<p>Jufearrington: </p>
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<div></div>Jufearringtonhttps://gcat.davidson.edu/GcatWiki/index.php?title=DNA_computing&diff=13208DNA computing2011-06-06T20:10:52Z<p>Jufearrington: </p>
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<div>'''DNA Computing PPT Concepts'''<br><br />
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Golden Gate HPP Concept: [[Media:GoldenGate_HPP.pptx]]<br />
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Golden Gate HPP Concept: [[Media:GoldenGate_HPP.pptx]]<br />
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Golden Gate Generic Primers: [[Media:ggsdiagram.pptx ]]<br />
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Golden Gate Cre Primers: [[Media:PRIMERDESIGN.docx ]]<br />
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Golden Gate Bla Primers: [[Media:primersforbla.docx ]]<br />
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'''DNA Computing Papers'''<br><br />
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[http://gcat.davidson.edu/mediawiki-1.15.0/images/6/62/Adelman_1994.pdf Adleman 1994] First DNA computer, used to solve 7-node, 14-edge HPP<br><br />
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[http://gcat.davidson.edu/mediawiki-1.15.0/images/2/22/Benneson_review_2009.pdf Benneson review 2009] Review of DNA computers in terms of Tiling systems, State Machines, Logic Networks. <br><br />
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[http://gcat.davidson.edu/mediawiki-1.15.0/images/a/a2/Chen_1999.pdf Chen 1999] DNA Comuting Implementing Genetic Algorithms<br />
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[http://gcat.davidson.edu/mediawiki-1.15.0/images/6/64/ShapiroNature2004.pdf ShapiroNature2004] DNA computer to analyze mRNA levels<br><br />
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[http://gcat.davidson.edu/mediawiki-1.15.0/images/6/68/Roweis_stickers_1996.pdf Roweis stickers 1996] A sticker based model for DNA computation<br><br />
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[http://gcat.davidson.edu/mediawiki-1.15.0/images/9/93/Rothemund_2000.pdf Rothemund 2000] DNA computing by self-assembly<br><br />
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[http://gcat.davidson.edu/mediawiki-1.15.0/images/4/44/Benneson_2003.pdf Benneson 2003] DNA computer using restriction and ligation<br><br />
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[http://gcat.davidson.edu/mediawiki-1.15.0/images/4/45/Bonehetal_1996.pdf Boneh 1996] Review on the computational power of DNA<br><br />
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[http://gcat.davidson.edu/mediawiki-1.15.0/images/e/e3/Adleman_SciAm.pdf Adleman Scientific American] Good introduction to Adleman HPP experiment<br><br />
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[http://gcat.davidson.edu/mediawiki-1.15.0/images/f/fa/Adleman_Data_Encryption_Standard_1999.pdf Adleman Data Encryption Standard 1999] Proposal to use the Sticker Model to attack the US Data Encryption Standard<br><br />
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[http://gcat.davidson.edu/mediawiki-1.15.0/images/d/d5/Aspects_of_Biomolecular_Computing.pdf] An overview of Biomolecular computing including a summary of DNA computing and a section on the limitations of such computing <br><br />
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[http://gcat.davidson.edu/mediawiki-1.15.0/images/0/07/DNA_computing_in_vitro_and_in_vivo.pdf] DNA computing in vitro and in vivo. An overview illustrating the differences between in vitro and in vivo DNA computing. 2001.<br />
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[http://gcat.davidson.edu/mediawiki-1.15.0/images/7/77/DNA_Computing_on_surface.pdf] The principle of the technique has been demonstrated experimentally for a simple example of the Hamiltonian path problem <br><br />
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[http://gcat.davidson.edu/mediawiki-1.15.0/images/6/6f/Ravinderjit_2000.pdf Ravinderjit 2000] Using a gel based DNA computer to solve a 6-variable 11-clause 3-SAT problem<br><br />
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Molecular Computation by Hairpin Formation; [http://gcat.davidson.edu/GcatWiki/images/3/39/Sakamoto_DNA_computer_3SAT.pdf Sakamoto et al.]<br />
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[http://gcat.davidson.edu/mediawiki-1.15.0/images/8/8b/2002_adleman.pdf 2002 Adleman.] Solution of a 20-Variable Problem on a DNA Computer. <br />
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[http://gcat.davidson.edu/mediawiki-1.15.0/images/d/d2/2011_physics.pdf 2011 Shu] DNA-Based Computing of Strategic Assignment Problems, <br />
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Criticism of DNA-Based Computing of Strategic Assignment Problems: http://arstechnica.com/science/news/2011/05/is-dna-computing-going-to-terminate-internet-banking.ars<br />
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[http://gcat.davidson.edu/mediawiki-1.15.0/images/3/35/DNA_circuits.pdf 2011 Qian] Scaling Up Digital Circuit Computation with DNA Strand Displacement Cascades. 2011 and its commentary in Science. [http://gcat.davidson.edu/mediawiki-1.15.0/images/7/72/DNA_circuits_Comm.pdf 2011 Reif]</div>Jufearringtonhttps://gcat.davidson.edu/GcatWiki/index.php?title=File:Primersforbla.docx&diff=13207File:Primersforbla.docx2011-06-06T20:10:37Z<p>Jufearrington: </p>
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<div></div>Jufearrington