https://gcat.davidson.edu/GcatWiki/api.php?action=feedcontributions&feedformat=atom&user=Tetaye 2026-05-17T08:29:51Z User contributions MediaWiki 1.28.2 https://gcat.davidson.edu/GcatWiki/index.php?title=File:ThyA_in_broth.jpg&diff=17380 2014-06-03T18:53:14Z

<p>Tetaye: </p> <hr /> <div>'''ThyA fitness module tested in broth, the tube on the left is the experimental tube with the thyA fitness module. The tube on the right is the control with just the plasmid and not fitness module insert. 4ml media in both tubes including 10ug/ml kanamycin, 50ug/ml ampicillin and 1.25mM theophylline.'''<br /> <br /> [[http://gcat.davidson.edu/mediawiki-1.19.1/index.php/File:ThyA_fitness_module.docx]]</div>

Tetaye https://gcat.davidson.edu/GcatWiki/index.php?title=Summer_2014_SynBio_Project_(Davidson_and_MWSU)&diff=17379 2014-06-03T18:29:05Z

<p>Tetaye: </p> <hr /> <div><br /> === Presentations during MWSU visit to Davidson ===<br /> <br /> Central Dogma presentation [[File:Central_dogma.pptx]]<br /> <br /> PCR presentation [[File:PCR.pptx]]<br /> <br /> Cloning presentation [[File:Cloning.pptx]]<br /> <br /> Riboswitch presentation [[File:Riboswitch_function.pptx]]<br /> <br /> Agent based modeling presentation [[File:AgentBased_Modeling.pptx]]<br /> <br /> Competition presentation [[File:Competition_Modeling.xlsx]]<br /> <br /> Programmed evolution presentation [[File:Programmed_Evolution.pdf]]<br /> <br /> Caffeine results [[File:Caffeine_Disk.pptx]]<br /> <br /> Ammeline presentation [[File:Ammeline.pptx]]<br /> <br /> Repressilator modeling exercises [[File:repressilator_modeling.docx]]<br /> <br /> Repressilator modeling Excel file [[File:Repressilator_model.xls]]<br /> <br /> Repressilator modeling Netlogo file [[File:Repressilator_mod.nlogo.zip]]<br /> <br /> === Biology Files ===<br /> <br /> Chaperone plasmid DNA sequences [[File:Chaperone_plasmid_DNA_sequences.docx]]<br /> <br /> Origin PCR Gels 5-26-14[[File:5-26-14 Orig PCR Elecpho Gel Pic.doc]]<br /> <br /> Chaperone PCR and Repeat Origin PCR 5-27-14[[File:5-27-14_Chap_PCR_and_Repeat_Ori_PCR.doc]]<br /> <br /> Chaperone PCR of original clones 5-27-14[[File:5-27-14_chaperone_pcr_clones_1-24.doc]]<br /> <br /> Origin PCR of original clones 5-27-14[[File:5-27-14 Ori PCR 1-24.doc ]]<br /> <br /> New Chap PCR clones 1-5[[File:5-28-14_New_Chap_PCR_1-5.doc ]]<br /> <br /> Combinations Labeling System [[File:Labeling.xlsx]]<br /> <br /> ThyA Fitness Module [[File:ThyA fitness module.docx]]<br /> <br /> ===Sub-pages on various topics===<br /> <br /> <br /> <br /> <br /> '''<br /> [[MATH]]<br /> '''<br /> <br /> [[Catherine Doyle Thesis Materials]]<br /> <br /> [[Repeating 20 Clone Experiments]]<br /> <br /> [[Extending theophylline application]]<br /> <br /> [[Melamine iteration]]<br /> <br /> [[Ramping up Programmed Evolution]]<br /> <br /> [[Rational Design of Riboswitches: papers to read]]<br /> <br /> [[ThyA Fitness Module]]</div>

Tetaye https://gcat.davidson.edu/GcatWiki/index.php?title=File:ThyA_on_Amp_and_Kan_plates.jpg&diff=17378 2014-06-03T18:27:51Z

<p>Tetaye: </p> <hr /> <div><br /> '''We plated the transformed cells with the thyA fitness module on kanamycin(10ug/ml), ampicillin(50ug/ml) and theophylline(1.25mM) plates. The transformed cells grew in comparison to the negative control that had just the plasmid and no thyA fines module insert. Experimental on top and negative control on the bottom.'''</div>

Tetaye https://gcat.davidson.edu/GcatWiki/index.php?title=File:ThyA_in_broth.jpg&diff=17377 2014-06-03T18:27:18Z

<p>Tetaye: </p> <hr /> <div>'''ThyA fitness module tested in broth, the tube on the left is the experimental tube with the thyA fitness module. The tube on the right is the control with just the plasmid and not fitness module insert. 4ml media in both tubes including 10ug/ml kanamycin, 50ug/ml ampicillin and 1.25mM theophylline.'''</div>

Tetaye https://gcat.davidson.edu/GcatWiki/index.php?title=File:ThyA_in_broth.jpg&diff=17376 2014-06-03T18:24:59Z

<p>Tetaye: </p> <hr /> <div>'''ThyA fitness module tested in broth, the tube on the left is the experimental tube with the thyA fitness module. The tube on the right is the control with just the plasmid and not fitness module insert.'''</div>

Tetaye https://gcat.davidson.edu/GcatWiki/index.php?title=File:ThyA_on_Amp_plates.jpg&diff=17375 2014-06-03T18:24:12Z

<p>Tetaye: </p> <hr /> <div>'''We took the transformed cells with the thyA fitness module and plated them on just Ampicillin plates. This was to mitigate having to select for both kanamycin and ampicillin resistance. Only transformed cells were expected to grow and they did in comparison with the negative control plated on amp. The negative control is just the plasmid that carries the kanamycin resistance, so it would have needed kanamycin to grow. Negative control on top. Experimental on the bottom.'''</div>

Tetaye https://gcat.davidson.edu/GcatWiki/index.php?title=File:ThyA_on_Amp_and_Kan_plates.jpg&diff=17374 2014-06-03T18:23:22Z

<p>Tetaye: </p> <hr /> <div><br /> '''We plated the transformed cells with the thyA fitness module on kanamycin(10ug/ml), ampicillin(50ug/ml) and theophylline(1.25mM) plates. The transformed cells grew in comparison to the negative control that had just the plasmid and no thyA fines module insert. Thymine was not added to neither of the plates. Experimental on top and negative control on the bottom.'''</div>

Tetaye https://gcat.davidson.edu/GcatWiki/index.php?title=File:ThyA_on_Amp_and_Kan_plates.jpg&diff=17373 2014-06-03T18:21:43Z

<p>Tetaye: </p> <hr /> <div><br /> ''We plated the transformed cells with the thyA fitness module on kanamycin(10ug/ml), ampicillin(50ug/ml) and theophylline(1.25mM) plates. The transformed cells grew in comparison to the negative control that had just the plasmid and no thyA fines module insert. Thymine was not added to neither of the plates. Experimental on top and negative control on the bottom.''''</div>

Tetaye https://gcat.davidson.edu/GcatWiki/index.php?title=File:ThyA_on_Amp_and_Kan_plates.jpg&diff=17372 2014-06-03T18:20:03Z

<p>Tetaye: </p> <hr /> <div>We plated the transformed cells with the thyA fitness module on kanamycin(10ug/ml), ampicillin(50ug/ml) and theophylline(1.25mM) plates. The transformed cells grew in comparison to the negative control that had just the plasmid and no thyA fines module insert. Thymine was not added to neither of the plates. Experimental on top and negative control on the bottom.</div>

Tetaye https://gcat.davidson.edu/GcatWiki/index.php?title=File:ThyA_on_Amp_plates.jpg&diff=17371 2014-06-03T18:19:27Z

<p>Tetaye: </p> <hr /> <div>We took the transformed cells with the thyA fitness module and plated them on just Ampicillin plates. This was to mitigate having to select for both kanamycin and ampicillin resistance. Only transformed cells were expected to grow and they did in comparison with the negative control plated on amp. The negative control is just the plasmid that carries the kanamycin resistance, so it would have needed kanamycin to grow. Negative control on top. Experimental on the bottom.</div>

Tetaye https://gcat.davidson.edu/GcatWiki/index.php?title=File:ThyA_on_Amp_and_Kan_plates.jpg&diff=17370 2014-06-03T18:17:25Z

<p>Tetaye: We plated the transformed cells with the thyA fitness module on kanamycin(10ug/ml), ampicillin(50ug/ml) and theophylline(1.25mM) plates. The transformed cells grew in comparison to the negative control that had just the plasmid and no thyA fines module...</p> <hr /> <div>We plated the transformed cells with the thyA fitness module on kanamycin(10ug/ml), ampicillin(50ug/ml) and theophylline(1.25mM) plates. The transformed cells grew in comparison to the negative control that had just the plasmid and no thyA fines module insert. Thymine was not added to neither of the plates.</div>

Tetaye https://gcat.davidson.edu/GcatWiki/index.php?title=File:ThyA_on_Amp_plates.jpg&diff=17369 2014-06-03T18:13:06Z

<p>Tetaye: We took the transformed cells with the thyA fitness module and plated them on just Ampicillin plates. This was to mitigate having to select for both kanamycin and ampicillin resistance. Only transformed cells were expected to grow and they did in compa...</p> <hr /> <div>We took the transformed cells with the thyA fitness module and plated them on just Ampicillin plates. This was to mitigate having to select for both kanamycin and ampicillin resistance. Only transformed cells were expected to grow and they did in comparison with the negative control plated on amp. The negative control is just the plasmid that carries the kanamycin resistance, so it would have needed kanamycin to grow.</div>

Tetaye https://gcat.davidson.edu/GcatWiki/index.php?title=ThyA_Fitness_Module&diff=17368 2014-06-03T18:08:38Z

<p>Tetaye: </p> <hr /> <div>[[File:ThyA in broth.jpg]]<br /> [[File:ThyA on Amp plates.jpg]]<br /> [[File:ThyA on Amp and Kan plates.jpg]]</div>

Tetaye https://gcat.davidson.edu/GcatWiki/index.php?title=File:ThyA_in_broth.jpg&diff=17367 2014-06-03T18:06:14Z

<p>Tetaye: </p> <hr /> <div>ThyA fitness module tested in broth, the tube on the left is the experimental tube with the thyA fitness module. The tube on the right is the control with just the plasmid and not fitness module insert.</div>

Tetaye https://gcat.davidson.edu/GcatWiki/index.php?title=File:ThyA_in_broth.jpg&diff=17366 2014-06-03T18:03:50Z

<p>Tetaye: </p> <hr /> <div></div>

Tetaye https://gcat.davidson.edu/GcatWiki/index.php?title=ThyA_Fitness_Module&diff=17365 2014-06-03T18:03:27Z

<p>Tetaye: Created page with &quot;File:ThyA in broth.jpg&quot;</p> <hr /> <div>[[File:ThyA in broth.jpg]]</div>

Tetaye https://gcat.davidson.edu/GcatWiki/index.php?title=Summer_2014_SynBio_Project_(Davidson_and_MWSU)&diff=17364 2014-06-03T17:58:06Z

<p>Tetaye: </p> <hr /> <div><br /> === Presentations during MWSU visit to Davidson ===<br /> <br /> Central Dogma presentation [[File:Central_dogma.pptx]]<br /> <br /> PCR presentation [[File:PCR.pptx]]<br /> <br /> Cloning presentation [[File:Cloning.pptx]]<br /> <br /> Riboswitch presentation [[File:Riboswitch_function.pptx]]<br /> <br /> Agent based modeling presentation [[File:AgentBased_Modeling.pptx]]<br /> <br /> Competition presentation [[File:Competition_Modeling.xlsx]]<br /> <br /> Programmed evolution presentation [[File:Programmed_Evolution.pdf]]<br /> <br /> Caffeine results [[File:Caffeine_Disk.pptx]]<br /> <br /> Ammeline presentation [[File:Ammeline.pptx]]<br /> <br /> Repressilator modeling exercises [[File:repressilator_modeling.docx]]<br /> <br /> Repressilator modeling Excel file [[File:Repressilator_model.xls]]<br /> <br /> Repressilator modeling Netlogo file [[File:Repressilator_mod.nlogo.zip]]<br /> <br /> === Biology Files ===<br /> <br /> Chaperone plasmid DNA sequences [[File:Chaperone_plasmid_DNA_sequences.docx]]<br /> <br /> Origin PCR Gels 5-26-14[[File:5-26-14 Orig PCR Elecpho Gel Pic.doc]]<br /> <br /> Chaperone PCR and Repeat Origin PCR 5-27-14[[File:5-27-14_Chap_PCR_and_Repeat_Ori_PCR.doc]]<br /> <br /> Chaperone PCR of original clones 5-27-14[[File:5-27-14_chaperone_pcr_clones_1-24.doc]]<br /> <br /> Origin PCR of original clones 5-27-14[[File:5-27-14 Ori PCR 1-24.doc ]]<br /> <br /> New Chap PCR clones 1-5[[File:5-28-14_New_Chap_PCR_1-5.doc ]]<br /> <br /> Combinations Labeling System [[File:Labeling.xlsx]]<br /> <br /> ThyA Fitness Module [[File:ThyA fitness module.docx]]<br /> <br /> ===Sub-pages on various topics===<br /> <br /> <br /> [[ThyA Fitness Module]]<br /> <br /> '''<br /> [[MATH]]<br /> '''<br /> <br /> [[Catherine Doyle Thesis Materials]]<br /> <br /> [[Repeating 20 Clone Experiments]]<br /> <br /> [[Extending theophylline application]]<br /> <br /> [[Melamine iteration]]<br /> <br /> [[Ramping up Programmed Evolution]]<br /> <br /> [[Rational Design of Riboswitches: papers to read]]</div>

Tetaye https://gcat.davidson.edu/GcatWiki/index.php?title=File:ThyA_fitness_module.docx&diff=17321 2014-05-28T02:53:57Z

<p>Tetaye: Tetaye uploaded a new version of &amp;quot;File:ThyA fitness module.docx&amp;quot;</p> <hr /> <div></div>

Tetaye https://gcat.davidson.edu/GcatWiki/index.php?title=Extending_theophylline_application&diff=17314 2014-05-27T18:43:02Z

<p>Tetaye: </p> <hr /> <div>'''How can the caffeine disk results be extended? What experiments can be done?'''<br /> <br /> Redo original experiment to verify results<br /> <br /> '''Natural selection experiment:'''<br /> Plate all clones on one plate and then plate clones in groups of 5 on 4 plates to see if there are other natural factors affecting growth that we haven’t considered.<br /> <br /> '''Finding the best clone:'''<br /> Plate clones in groups of 5 on 4 plates in the presence of caffeine (varying levels for varying experiments). Take the best clone from each plate and plate them on one plate to see the best (all taking into account any additional natural variables that need to be monitored or accounted for).<br /> <br /> '''Broth experiment:'''<br /> If one clone really is the best, then test it in broth to make the experiment/results more versatile. If it is the best, it should dominate the broth very quickly.<br /> <br /> '''Questions:'''<br /> <br /> What if the best fitness module is in a naturally failing e coli (due to factors we have not considered or measured)?<br /> <br /> Should our future experiments focus on optimization (if we already have a good system) or on diversification (broth, other common lab situations that would be easier for someone to use than plates, etc). Do we care which is best or do we want an easy process that is sufficiently good?<br /> <br /> Is more prep time worth a better result (financially)?<br /> <br /> Is there a way to figure out which will be more dominant even when it isn’t dominant yet? Is there some sort of trend or flag that we can identify that would indicate a population that will eventually be dominant?<br /> <br /> <br /> <br /> <br /> <br /> <br /> Determine growth in the Ecoli strain<br /> <br /> -Wild type in broth at 37 degrees Celsius<br /> -Grow them 12-14 hours<br /> <br /> The superstar combination #14<br /> 2 tests in each campus<br /> <br /> 1st test tube- broth, tet, chlor and amp<br /> 2nd test tube- broth, tet, chlor, amp and<br /> <br /> -Broth, tet<br /> -Growth with theophylline, tet resistance<br /> -no growth, demetylase problem <br /> <br /> Question is growth<br /> Two test-tube with all 24 clones<br /> <br /> 1st tube- tet and amp<br /> 2nd tube tet, chlor and amp<br /> <br /> 6 tubes of all combinations<br /> chlor not run on the last chaperone group<br /> <br /> Theophylline control<br /> <br /> 1Liter LB+4mM <br /> 1mL(50ug/mL Amp) <br /> 4mL(5mg/mL Tet)<br /> 1mL(35ug/mL Chloro)<br /> <br /> Cells- 120 mL cells each time</div>

Tetaye https://gcat.davidson.edu/GcatWiki/index.php?title=Extending_theophylline_application&diff=17313 2014-05-27T18:42:17Z

<p>Tetaye: </p> <hr /> <div>'''How can the caffeine disk results be extended? What experiments can be done?'''<br /> <br /> Redo original experiment to verify results<br /> <br /> '''Natural selection experiment:'''<br /> Plate all clones on one plate and then plate clones in groups of 5 on 4 plates to see if there are other natural factors affecting growth that we haven’t considered.<br /> <br /> '''Finding the best clone:'''<br /> Plate clones in groups of 5 on 4 plates in the presence of caffeine (varying levels for varying experiments). Take the best clone from each plate and plate them on one plate to see the best (all taking into account any additional natural variables that need to be monitored or accounted for).<br /> <br /> '''Broth experiment:'''<br /> If one clone really is the best, then test it in broth to make the experiment/results more versatile. If it is the best, it should dominate the broth very quickly.<br /> <br /> '''Questions:'''<br /> <br /> What if the best fitness module is in a naturally failing e coli (due to factors we have not considered or measured)?<br /> <br /> Should our future experiments focus on optimization (if we already have a good system) or on diversification (broth, other common lab situations that would be easier for someone to use than plates, etc). Do we care which is best or do we want an easy process that is sufficiently good?<br /> <br /> Is more prep time worth a better result (financially)?<br /> <br /> Is there a way to figure out which will be more dominant even when it isn’t dominant yet? Is there some sort of trend or flag that we can identify that would indicate a population that will eventually be dominant?<br /> <br /> <br /> <br /> <br /> <br /> <br /> Determine growth in the Ecoli strain<br /> <br /> -Wild type in broth at 37 degrees Celsius<br /> -Grow them 12-14 hours<br /> <br /> The superstar combination #14<br /> 2 tests in each campus<br /> 1st test tube- broth, tet, chlor and amp<br /> 2nd test tube- broth, tet, chlor, amp and <br /> -Broth, tet<br /> -Growth with theophylline, tet resistance<br /> -no growth, demetylase problem <br /> <br /> Question is growth<br /> Two test-tube with all 24 clones<br /> 1st tube- tet and amp<br /> 2nd tube tet, chlor and amp<br /> <br /> 6 tubes of all combinations<br /> chlor not run on the last chaperone group<br /> <br /> Theophylline control<br /> <br /> 1Liter LB+4mM <br /> 1mL(50ug/mL Amp) <br /> 4mL(5mg/mL Tet)<br /> 1mL(35ug/mL Chloro)<br /> <br /> Cells- 120 mL cells each time</div>

Tetaye https://gcat.davidson.edu/GcatWiki/index.php?title=Extending_theophylline_application&diff=17306 2014-05-27T15:38:16Z

<p>Tetaye: </p> <hr /> <div>'''How can the caffeine disk results be extended? What experiments can be done?'''<br /> <br /> Redo original experiment to verify results<br /> <br /> '''Natural selection experiment:'''<br /> Plate all clones on one plate and then plate clones in groups of 5 on 4 plates to see if there are other natural factors affecting growth that we haven’t considered.<br /> <br /> '''Finding the best clone:'''<br /> Plate clones in groups of 5 on 4 plates in the presence of caffeine (varying levels for varying experiments). Take the best clone from each plate and plate them on one plate to see the best (all taking into account any additional natural variables that need to be monitored or accounted for).<br /> <br /> '''Broth experiment:'''<br /> If one clone really is the best, then test it in broth to make the experiment/results more versatile. If it is the best, it should dominate the broth very quickly.<br /> <br /> '''Questions:'''<br /> <br /> What if the best fitness module is in a naturally failing e coli (due to factors we have not considered or measured)?<br /> <br /> Should our future experiments focus on optimization (if we already have a good system) or on diversification (broth, other common lab situations that would be easier for someone to use than plates, etc). Do we care which is best or do we want an easy process that is sufficiently good?<br /> <br /> Is more prep time worth a better result (financially)?<br /> <br /> Is there a way to figure out which will be more dominant even when it isn’t dominant yet? Is there some sort of trend or flag that we can identify that would indicate a population that will eventually be dominant?<br /> <br /> <br /> <br /> <br /> 1. Determine growth in the Ecoli strain<br /> -Wild type in broth at 37 degrees Celsius<br /> -Grow them 12-14 hours<br /> 2. The superstar combination #14<br /> 2 tests in each campus<br /> 1st test tube- broth, tet, chlor and amp<br /> 2nd test tube- broth, tet, chlor, amp and <br /> -Broth, tet<br /> -Growth with theophylline, tet resistance<br /> -no growth, demetylase problem <br /> 3. Question is growth<br /> Two test-tube with all 24 clones<br /> 1st tube- tet and amp<br /> 2nd tube tet, chlor and amp<br /> 4. 6 tubes of all combinations<br /> chlor not run on the last chaperone group<br /> <br /> 5. Theophylline<br /> <br /> 1Liter LB+4mM <br /> 1mL(50ug/mL Amp) <br /> 4mL(5mg/mL Tet)<br /> 1mL(35ug/mL Chloro)<br /> <br /> Cells- 120 mL cells each time</div>

Tetaye https://gcat.davidson.edu/GcatWiki/index.php?title=File:ThyA_fitness_module.docx&diff=17301 2014-05-25T00:54:47Z

<p>Tetaye: </p> <hr /> <div></div>

Tetaye https://gcat.davidson.edu/GcatWiki/index.php?title=Summer_2014_SynBio_Project_(Davidson_and_MWSU)&diff=17300 2014-05-25T00:54:27Z

<p>Tetaye: </p> <hr /> <div>Central Dogma presentation [[File:Central_dogma.pptx]]<br /> <br /> PCR presentation [[File:PCR.pptx]]<br /> <br /> Cloning presentation [[File:Cloning.pptx]]<br /> <br /> Riboswitch presentation [[File:Riboswitch_function.pptx]]<br /> <br /> Agent based modeling presentation [[File:AgentBased_Modeling.pptx]]<br /> <br /> Competition presentation [[File:Competition_Modeling.xlsx]]<br /> <br /> Programmed evolution presentation [[File:Programmed_Evolution.pdf]]<br /> <br /> Caffeine results [[File:Caffeine_Disk.pptx]]<br /> <br /> Ammeline presentation [[File:Ammeline.pptx]]<br /> <br /> Repressilator modeling exercises [[File:repressilator_modeling.docx]]<br /> <br /> Repressilator modeling Excel file [[File:Repressilator_model.xls]]<br /> <br /> Repressilator modeling Netlogo file [[File:Repressilator_mod.nlogo.zip]]<br /> <br /> Chaperone plasmid DNA sequences [[File:Chaperone_plasmid_DNA_sequences.docx]]<br /> <br /> '''<br /> [[MATH]]<br /> '''<br /> <br /> [[Catherine Doyle Thesis Materials]]<br /> <br /> [[Repeating 20 Clone Experiments]]<br /> <br /> [[Extending theophylline application]]<br /> <br /> Combinations Labeling System [[File:Labeling.xlsx]]<br /> <br /> ThyA Fitness Module [[File:ThyA fitness module.docx]]<br /> <br /> [[Melamine iteration]]<br /> <br /> [[Ramping up Programmed Evolution]]</div>

Tetaye https://gcat.davidson.edu/GcatWiki/index.php?title=Summer_2014_SynBio_Project_(Davidson_and_MWSU)&diff=17299 2014-05-25T00:48:21Z

<p>Tetaye: </p> <hr /> <div>Central Dogma presentation [[File:Central_dogma.pptx]]<br /> <br /> PCR presentation [[File:PCR.pptx]]<br /> <br /> Cloning presentation [[File:Cloning.pptx]]<br /> <br /> Riboswitch presentation [[File:Riboswitch_function.pptx]]<br /> <br /> Agent based modeling presentation [[File:AgentBased_Modeling.pptx]]<br /> <br /> Competition presentation [[File:Competition_Modeling.xlsx]]<br /> <br /> Programmed evolution presentation [[File:Programmed_Evolution.pdf]]<br /> <br /> Caffeine results [[File:Caffeine_Disk.pptx]]<br /> <br /> Ammeline presentation [[File:Ammeline.pptx]]<br /> <br /> Repressilator modeling exercises [[File:repressilator_modeling.docx]]<br /> <br /> Repressilator modeling Excel file [[File:Repressilator_model.xls]]<br /> <br /> Repressilator modeling Netlogo file [[File:Repressilator_mod.nlogo.zip]]<br /> <br /> Chaperone plasmid DNA sequences [[File:Chaperone_plasmid_DNA_sequences.docx]]<br /> <br /> '''<br /> [[MATH]]<br /> '''<br /> <br /> [[Catherine Doyle Thesis Materials]]<br /> <br /> [[Repeating 20 Clone Experiments]]<br /> <br /> [[Extending theophylline application]]<br /> <br /> Combinations Labeling System [[File:Labeling.xlsx]]<br /> <br /> <br /> [[Melamine iteration]]<br /> <br /> [[Ramping up Programmed Evolution]]</div>

Tetaye https://gcat.davidson.edu/GcatWiki/index.php?title=Summer_2014_SynBio_Project_(Davidson_and_MWSU)&diff=17298 2014-05-25T00:46:42Z

<p>Tetaye: </p> <hr /> <div>Central Dogma presentation [[File:Central_dogma.pptx]]<br /> <br /> PCR presentation [[File:PCR.pptx]]<br /> <br /> Cloning presentation [[File:Cloning.pptx]]<br /> <br /> Riboswitch presentation [[File:Riboswitch_function.pptx]]<br /> <br /> Agent based modeling presentation [[File:AgentBased_Modeling.pptx]]<br /> <br /> Competition presentation [[File:Competition_Modeling.xlsx]]<br /> <br /> Programmed evolution presentation [[File:Programmed_Evolution.pdf]]<br /> <br /> Caffeine results [[File:Caffeine_Disk.pptx]]<br /> <br /> Ammeline presentation [[File:Ammeline.pptx]]<br /> <br /> Repressilator modeling exercises [[File:repressilator_modeling.docx]]<br /> <br /> Repressilator modeling Excel file [[File:Repressilator_model.xls]]<br /> <br /> Repressilator modeling Netlogo file [[File:Repressilator_mod.nlogo.zip]]<br /> <br /> Chaperone plasmid DNA sequences [[File:Chaperone_plasmid_DNA_sequences.docx]]<br /> <br /> '''<br /> [[MATH]]<br /> '''<br /> <br /> [[Catherine Doyle Thesis Materials]]<br /> <br /> [[Repeating 20 Clone Experiments]]<br /> <br /> [[Extending theophylline application]]<br /> <br /> Combinations Labeling System [[File:Labeling.xlsx]]<br /> <br /> [[File:[[Link ThyA Fitness Module]]<br /> <br /> [[Melamine iteration]]<br /> <br /> [[Ramping up Programmed Evolution]]</div>

Tetaye https://gcat.davidson.edu/GcatWiki/index.php?title=Summer_2014_SynBio_Project_(Davidson_and_MWSU)&diff=17265 2014-05-22T13:16:28Z

<p>Tetaye: </p> <hr /> <div>Central Dogma presentation [[File:Central_dogma.pptx]]<br /> <br /> PCR presentation [[File:PCR.pptx]]<br /> <br /> Cloning presentation [[File:Cloning.pptx]]<br /> <br /> Riboswitch presentation [[File:Riboswitch_function.pptx]]<br /> <br /> Agent based modeling presentation [[File:AgentBased_Modeling.pptx]]<br /> <br /> Competition presentation [[File:Competition_Modeling.xlsx]]<br /> <br /> Programmed evolution presentation [[File:Programmed_Evolution.pdf]]<br /> <br /> Caffeine results [[File:Caffeine_Disk.pptx]]<br /> <br /> Ammeline presentation [[File:Ammeline.pptx]]<br /> <br /> Repressilator modeling exercises [[File:repressilator_modeling.docx]]<br /> <br /> Repressilator modeling Excel file [[File:Repressilator_model.xls]]<br /> <br /> Repressilator modeling Netlogo file [[File:Repressilator_mod.nlogo.zip]]<br /> <br /> Chaperone plasmid DNA sequences [[File:Chaperone_plasmid_DNA_sequences.docx]]<br /> <br /> '''<br /> [[MATH]]<br /> '''<br /> <br /> [[Catherine Doyle Thesis Materials]]<br /> <br /> [[Repeating 20 Clone Experiments]]<br /> <br /> [[Extending theophylline application]]<br /> <br /> Combinations Labeling System [[File:Labeling.xlsx]]<br /> <br /> [[Melamine iteration]]<br /> <br /> [[Ramping up Programmed Evolution]]</div>

Tetaye https://gcat.davidson.edu/GcatWiki/index.php?title=File:Labeling.xlsx&diff=17264 2014-05-22T13:15:53Z

<p>Tetaye: </p> <hr /> <div></div>

Tetaye https://gcat.davidson.edu/GcatWiki/index.php?title=Summer_2014_SynBio_Project_(Davidson_and_MWSU)&diff=17263 2014-05-22T13:15:36Z

<p>Tetaye: </p> <hr /> <div>Central Dogma presentation [[File:Central_dogma.pptx]]<br /> <br /> PCR presentation [[File:PCR.pptx]]<br /> <br /> Cloning presentation [[File:Cloning.pptx]]<br /> <br /> Riboswitch presentation [[File:Riboswitch_function.pptx]]<br /> <br /> Agent based modeling presentation [[File:AgentBased_Modeling.pptx]]<br /> <br /> Competition presentation [[File:Competition_Modeling.xlsx]]<br /> <br /> Programmed evolution presentation [[File:Programmed_Evolution.pdf]]<br /> <br /> Caffeine results [[File:Caffeine_Disk.pptx]]<br /> <br /> Ammeline presentation [[File:Ammeline.pptx]]<br /> <br /> Repressilator modeling exercises [[File:repressilator_modeling.docx]]<br /> <br /> Repressilator modeling Excel file [[File:Repressilator_model.xls]]<br /> <br /> Repressilator modeling Netlogo file [[File:Repressilator_mod.nlogo.zip]]<br /> <br /> Chaperone plasmid DNA sequences [[File:Chaperone_plasmid_DNA_sequences.docx]]<br /> <br /> '''<br /> [[MATH]]<br /> '''<br /> <br /> [[Catherine Doyle Thesis Materials]]<br /> <br /> [[Repeating 20 Clone Experiments]]<br /> <br /> [[Extending theophylline application]]<br /> <br /> [[File:Labeling.xlsx]]<br /> <br /> [[Melamine iteration]]<br /> <br /> [[Ramping up Programmed Evolution]]</div>

Tetaye https://gcat.davidson.edu/GcatWiki/index.php?title=File:Combinations_Labeling_System.xlsx&diff=17262 2014-05-22T13:12:37Z

<p>Tetaye: </p> <hr /> <div></div>

Tetaye https://gcat.davidson.edu/GcatWiki/index.php?title=Summer_2014_SynBio_Project_(Davidson_and_MWSU)&diff=17261 2014-05-22T13:09:19Z

<p>Tetaye: </p> <hr /> <div>Central Dogma presentation [[File:Central_dogma.pptx]]<br /> <br /> PCR presentation [[File:PCR.pptx]]<br /> <br /> Cloning presentation [[File:Cloning.pptx]]<br /> <br /> Riboswitch presentation [[File:Riboswitch_function.pptx]]<br /> <br /> Agent based modeling presentation [[File:AgentBased_Modeling.pptx]]<br /> <br /> Competition presentation [[File:Competition_Modeling.xlsx]]<br /> <br /> Programmed evolution presentation [[File:Programmed_Evolution.pdf]]<br /> <br /> Caffeine results [[File:Caffeine_Disk.pptx]]<br /> <br /> Ammeline presentation [[File:Ammeline.pptx]]<br /> <br /> Repressilator modeling exercises [[File:repressilator_modeling.docx]]<br /> <br /> Repressilator modeling Excel file [[File:Repressilator_model.xls]]<br /> <br /> Repressilator modeling Netlogo file [[File:Repressilator_mod.nlogo.zip]]<br /> <br /> Chaperone plasmid DNA sequences [[File:Chaperone_plasmid_DNA_sequences.docx]]<br /> <br /> '''<br /> [[MATH]]<br /> '''<br /> <br /> [[Catherine Doyle Thesis Materials]]<br /> <br /> [[Repeating 20 Clone Experiments]]<br /> <br /> [[Extending theophylline application]]<br /> <br /> [[File:Combinations Labeling System]]<br /> [[Melamine iteration]]<br /> <br /> [[Ramping up Programmed Evolution]]</div>

Tetaye