View source for Web based genome comparison tool

*[http://www.jxxi.com/webstart/app/jdotter-a-java-dot-plot-viewer.html JDotter]
**A java based tool designed to compare whole genome
**Runs comparison operations locally
**Need a java install thing
*[https://docs.google.com/viewer?url=http%3A%2F%2Fwww.iscb.org%2Fcms_addon%2Fconferences%2Fismb2005%2Fdemos%2F30.pdf M-GCAT]
**in C and Python
**Runs locally from command line??? => could generate on server. Too much work for server?
*[http://www.broadinstitute.org/annotation/medea/dotplot/ MEDEA]
**This is what I want!
**At its minimum, the MEDEA Dot Plot only needs JSON formatted data for the sequences and JSON formatted data for alignments.
*[http://www.broadinstitute.org/annotation/medea/stackmap/]
**Multigenome comparison tool