https://gcat.davidson.edu/GcatWiki/index.php?action=history&feed=atom&title=2%2F8%2F18 2026-05-18T13:04:08Z Revision history for this page on the wiki MediaWiki 1.28.2 https://gcat.davidson.edu/GcatWiki/index.php?title=2/8/18&diff=19189&oldid=prev 2018-02-08T15:59:49Z

<p>Created page with &quot;Clicking on i button lets us see what parameters we entered when running test P-values: -adjuststed p-value wont work because our samples are so small -we will use regular...&quot;</p> <p><b>New page</b></p><div>Clicking on i button lets us see what parameters we entered when running test <br /> <br /> P-values: <br /> -adjuststed p-value wont work because our samples are so small <br /> -we will use regular p-value (cutoff &lt;0.05) <br /> <br /> <br /> Test: <br /> -DEseq <br /> ---All C201R vs all wildtype (both male and female) <br /> link:<br /> [https://docs.google.com/spreadsheets/d/1aqRSoBKsdD7N9NNgYIWdH-uLPmGy_y3Wm94tVvXbLso/edit?ts=5a7c661a#gid=0<br /> ]<br /> <br /> Today- <br /> -sort by p value<br /> FNTM-mouse specific <br /> Gene cards<br /> Gene Weaver<br /> Go rilla <br /> FNTM<br /> String <br /> <br /> minimum fold change: ~2 needed <br /> <br /> How our data was collected: whole spinal cord <br /> <br /> reasons why we might get genes that dont have anything to do with CMT<br /> -non-nueronal tissue <br /> -genes <br /> <br /> impression: <br /> -protein is secreted and blocking signaling <br /> -surface protein, <br /> <br /> reason why we don't have tighter clustering:<br /> -receptors not completely BLOCKED, and thats part of the disease progression<br /> -baseline genetic differences related NOT related to CMT</div>

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