https://gcat.davidson.edu/GcatWiki/index.php?action=history&feed=atom&title=Alignment_Instructions 2026-04-22T22:10:23Z Revision history for this page on the wiki MediaWiki 1.28.2 https://gcat.davidson.edu/GcatWiki/index.php?title=Alignment_Instructions&diff=6192&oldid=prev 2008-09-09T03:44:22Z

<p></p> <p><b>New page</b></p><div>In order to display the alignment of two paralogs:&lt;br&gt;<br /> &lt;br&gt;<br /> Select the gene of interest.&lt;br&gt;<br /> Scroll to the bottom of the Gene Detail page.&lt;br&gt;<br /> Under &quot;Homolog Display&quot;, you will find a &quot;Homolog selection&quot; dropbox.&lt;br&gt;<br /> Select &quot;Paralogs / Orthologs.&quot;&lt;br&gt;<br /> &lt;br&gt;<br /> Be sure that the box is checked off next to &quot;Include current query gene ########## in this page for adding to gene cart.&quot;&lt;br&gt;<br /> Check off the box next to the paralog of interest.&lt;br&gt;<br /> Click &quot;Add Selections To Gene Cart.&quot;&lt;br&gt;<br /> Under &quot;Sequence Alignment,&quot; click &quot;DNA&quot; and uncheck &quot;Color Alignments with Mview.&quot;&lt;br&gt;<br /> Click &quot;Do Alignment.&quot;&lt;br&gt;<br /> &lt;br&gt;<br /> The resulting page displays the alignment of the two sequences in ClustalW, a widely used alignment format.</div>

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