https://gcat.davidson.edu/GcatWiki/index.php?action=history&feed=atom&title=DM_Notes_3.10.16 2026-05-17T08:30:52Z Revision history for this page on the wiki MediaWiki 1.28.2 https://gcat.davidson.edu/GcatWiki/index.php?title=DM_Notes_3.10.16&diff=18404&oldid=prev 2016-03-10T18:48:32Z

<p>Created page with &quot;Today: working on presentation, approach one. Convert online presentation to powerpoint, put it on a flash drive please -Dr. C Working on approach one: PURPOSE: to find a s...&quot;</p> <p><b>New page</b></p><div>Today: working on presentation, approach one. Convert online presentation to powerpoint, put it on a flash drive please -Dr. C<br /> <br /> Working on approach one: <br /> <br /> PURPOSE: to find a small group of differentially expressed genes and use their GO IDs to uncover molecular function​<br /> ​<br /> PROCESS:​<br /> From .results files, compare gene FPKM values across samples (1-3 vs 4-6) to find most differentially expressed genes​<br /> Group significant genes by GO terms to gain insight into key functions​<br /> Can also compare our results to DEseq generated genes<br /> <br /> We're working on coding/excel-ing this today. In Python, we will open up three .results files at a time. For each contig in the file, we'll generate an average FPKM (normalized) score, then output the contig and score to a text file. <br /> Back to home [[Dylan Maghini]]</div>

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