Gene Annotation Template - Revision history

Salt at 16:26, 9 September 2008

2008-09-09T16:26:01Z

2008-09-09T15:14:38Z

‎Module Priority List

2008-09-09T15:12:57Z

‎Module Priority List

2008-09-09T15:04:11Z

2008-09-09T14:59:55Z

2008-09-09T14:38:45Z

‎Gene Annotation Log - Template

2008-09-09T14:37:16Z

2008-09-09T12:06:48Z

2008-09-09T12:04:04Z

2008-09-09T12:00:58Z

@@ Line 8: / Line 8: @@
 -Horizontal Gene Transfer<br>
 -Pathways<br>
-[[Media:UiMap.pdf]] Headings and Searches (download PDF)
+[[Media:UiMap.pdf]] Headings and Searches (download PDF)<br>
 ==Gene Annotation Log - Template==

@@ Line 8: / Line 8: @@
 -Horizontal Gene Transfer<br>
 -Pathways<br>
-[[Media:UiMap.pdf]]
+[[Media:UiMap.pdf]] Headings and Searches (download PDF)
 ==Gene Annotation Log - Template==

@@ Line 8: / Line 8: @@
 -Horizontal Gene Transfer<br>
 -Pathways<br>
 ==Gene Annotation Log - Template==

← Older revision		Revision as of 15:04, 9 September 2008
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−	~~[[Standard Operating Procedure]]~~	+	== Module Priority List ==
		+	-Alternative ORFs<br>
		+	-Basic Info<br>
		+	-Sequence similarity<br>
		+	-Cell Localization<br>
		+	-Duplication and Degradation<br>
		+	-Structure-Based Evidence of Function<br>
		+	-Horizontal Gene Transfer<br>
		+	-Pathways<br>

	==Gene Annotation Log - Template==		==Gene Annotation Log - Template==

← Older revision		Revision as of 14:59, 9 September 2008
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		+	[[Standard Operating Procedure]]
		+
	==Gene Annotation Log - Template==		==Gene Annotation Log - Template==

@@ Line 209: / Line 209: @@
 '''Evidence of Horizontal Gene Transfer:'''<br>
 <br>
 [[Evidence of Horizontal Gene Transfer (Module Eight) Instructions]]

@@ Line 156: / Line 156: @@
 -    In the search bar you can enter:
-        - The name of a compound, gene, protein or pathway. Examples: pyruvate, trpA <br>
+        - The name of a compound, gene, protein or pathway.<br>
-        - Any substring of one of the above names that is 3 or more characters in length. Examples: kinase, pyr <br>
+        - Any substring of one of the above names that is 3 or more characters in length.<br>
-        - An EC number (full or partial). Examples: 1.2.3.3, 1.3.99 <br>
+        - An EC number (full or partial). <br>
-        - An identifier from some external database to which we maintain links, e.g. UniProt. (JGI didn't seem to be one of these databases) Examples: P00561, NP_414543, C00047 <br>
+        - An identifier from some external database to which they maintain links, e.g. UniProt. <br>
-        - The internal object identifier for any compound, gene, protein, pathway, reaction, transcription-unit or schema class. Examples: CPLX0-3661, HEMN-RXN <br>
+        - The internal object identifier for any compound, gene, protein, pathway, reaction, etc. <br>
 JGI wants us to use the website to enter the pathway for each gene and provide the E.C. number.<br>

@@ Line 155: / Line 155: @@
 This is a bioinformatics database that describes the genome and the biochemical machinery of ''E. coli'' K-12 MG1655. It can be used as a reference source that we can relate our findings to.
-JGI wants us to use the website to enter the pathway for each gene.
+-    In the search bar you can enter:
-E.C. Number: <br>
+       - Any substring of one of the above names that is 3 or more characters in length.
-<br>
+Examples: kinase, pyr <br>
 ----