https://gcat.davidson.edu/GcatWiki/index.php?action=history&feed=atom&title=HMM_logo 2026-04-08T14:32:20Z Revision history for this page on the wiki MediaWiki 1.28.2 https://gcat.davidson.edu/GcatWiki/index.php?title=HMM_logo&diff=6204&oldid=prev 2008-09-09T06:49:28Z

<p></p> <p><b>New page</b></p><div>The HMM logo is a graphical representation of the Hidden Markov Model that decribes the properties of that HMM. The full data on interpreting HMM logos is given [http://www.sanger.ac.uk/Software/analysis/logomat-m/help.shtml here]. Put simply, the differing heights and colors of the letters represent different properties of the positions in the HMM they represent.<br /> <br /> [[image:HMM_logo.png]]<br /> &lt;br&gt;&lt;small&gt;&lt;b&gt;Fig. 1.&lt;/b&gt; An example of the HMM logo from methyl-accepting chemotaxis protein in &lt;i&gt;Halorhabdus utahensis&lt;/i&gt;. Only the first few sections of the logo are displayed here; the full logo is too large to display here.&lt;/small&gt; <br /> <br /> Clicking the name of the Pfam, followed by the &quot;HMM Logo&quot; button on the sidebar, will bring up the HMM Logo.</div>

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