JP Jan 28 16 - Revision history

Jupreziosi at 18:50, 28 January 2016

2016-01-28T18:50:21Z

2016-01-28T18:49:07Z

2016-01-28T18:48:50Z

2016-01-28T18:38:35Z

Created page with "Julia Preziosi"

New page

[[Julia Preziosi]]

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 Have asked for a list of the genes expressed in each organ from the previous paper. (Todd?)
-* How can we use the data set, can we query?
+* How can we use the data repository, can we query? SRP051827
 * Two teams to work in pairs to figure out a way to take the text file and add a number to "protein of unknown function"  / see if other genes are named more than once.

@@ Line 11: / Line 11: @@
 Have asked for a list of the genes expressed in each organ from the previous paper. (Todd?)
-How can we use the data set, can we query?
+* How can we use the data set, can we query?
-Two teams to work in pairs to figure out a way to take the text file and add a number to "protein of unknown function"  / see if other genes are named more than once.
+* Two teams to work in pairs to figure out a way to take the text file and add a number to "protein of unknown function"  / see if other genes are named more than once.

← Older revision		Revision as of 18:48, 28 January 2016
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	[[Julia Preziosi]]		[[Julia Preziosi]]
		+
		+	72 nucleotide reads. What gene do they go to? How many of each are there?
		+
		+	How to count number of genes and compare across time points? Normalize to a housekeeping gene. OR standard procedure (look up).
		+	* "How to normalize gene expression given you don't get the same number of reads in each sample"
		+
		+	How to know we have the right tissue?
		+	* Blast overrepresented sequences of trimmed intestinal sequences.
		+
		+	Have asked for a list of the genes expressed in each organ from the previous paper. (Todd?)
		+
		+	How can we use the data set, can we query?
		+
		+	Two teams to work in pairs to figure out a way to take the text file and add a number to "protein of unknown function" / see if other genes are named more than once.