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		<id>https://gcat.davidson.edu/GcatWiki/index.php?action=history&amp;feed=atom&amp;title=Score</id>
		<title>Score - Revision history</title>
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		<updated>2026-04-22T20:17:37Z</updated>
		<subtitle>Revision history for this page on the wiki</subtitle>
		<generator>MediaWiki 1.28.2</generator>

	<entry>
		<id>https://gcat.davidson.edu/GcatWiki/index.php?title=Score&amp;diff=6185&amp;oldid=prev</id>
		<title>Salt at 03:20, 9 September 2008</title>
		<link rel="alternate" type="text/html" href="https://gcat.davidson.edu/GcatWiki/index.php?title=Score&amp;diff=6185&amp;oldid=prev"/>
				<updated>2008-09-09T03:20:53Z</updated>
		
		<summary type="html">&lt;p&gt;&lt;/p&gt;
&lt;table class=&quot;diff diff-contentalign-left&quot; data-mw=&quot;interface&quot;&gt;
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				&lt;td colspan='2' style=&quot;background-color: white; color:black; text-align: center;&quot;&gt;← Older revision&lt;/td&gt;
				&lt;td colspan='2' style=&quot;background-color: white; color:black; text-align: center;&quot;&gt;Revision as of 03:20, 9 September 2008&lt;/td&gt;
				&lt;/tr&gt;&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot; id=&quot;mw-diff-left-l1&quot; &gt;Line 1:&lt;/td&gt;
&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 1:&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;−&lt;/td&gt;&lt;td style=&quot;color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;Bit score is calculated from a formula that takes into account the alignment of similar or identical residues, as well as any gaps introduced to align the sequences.&amp;#160; A key element in this calculation is the &amp;quot;Substitution matrix&amp;quot;, which assigns a score for aligning any possible pair of residues.&amp;#160; Bit scores are normalized, which means that the bit scores from different alignments can be compared, even if different scoring matrices have been used.&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;Bit score is calculated from a formula that takes into account the alignment of similar or identical residues, as well as any gaps introduced to align the sequences.&amp;#160; A key element in this calculation is the &amp;quot;Substitution matrix&amp;quot;, which assigns a score for aligning any possible pair of residues.&amp;#160; Bit scores are normalized, which means that the bit scores from different alignments can be compared, even if different scoring matrices have been used.&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;&amp;lt;br&amp;gt;&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;&amp;lt;br&amp;gt;&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;[http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=handbook.glossary.1237#app8]&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;/table&gt;</summary>
		<author><name>Salt</name></author>	</entry>

	<entry>
		<id>https://gcat.davidson.edu/GcatWiki/index.php?title=Score&amp;diff=6182&amp;oldid=prev</id>
		<title>Salt at 03:13, 9 September 2008</title>
		<link rel="alternate" type="text/html" href="https://gcat.davidson.edu/GcatWiki/index.php?title=Score&amp;diff=6182&amp;oldid=prev"/>
				<updated>2008-09-09T03:13:19Z</updated>
		
		<summary type="html">&lt;p&gt;&lt;/p&gt;
&lt;p&gt;&lt;b&gt;New page&lt;/b&gt;&lt;/p&gt;&lt;div&gt;Bit score is calculated from a formula that takes into account the alignment of similar or identical residues, as well as any gaps introduced to align the sequences.  A key element in this calculation is the &amp;quot;Substitution matrix&amp;quot;, which assigns a score for aligning any possible pair of residues.  Bit scores are normalized, which means that the bit scores from different alignments can be compared, even if different scoring matrices have been used.&lt;/div&gt;</summary>
		<author><name>Salt</name></author>	</entry>

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