Difference between revisions of "Aspartate Carbamoyltransferase"
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TPYAYYFQQAENGVYAREALLALVLNETL | TPYAYYFQQAENGVYAREALLALVLNETL | ||
| + | ''Vibrio splendidus'' | ||
| + | >gi|218710660|ref|YP_002418281.1| aspartate carbamoyltransferase catalytic subunit [Vibrio splendidus LGP32] | ||
| + | MANSLYQKHIISIPELSREELELIVQTAGQLKAEPNPELIKNKVVASCFFEPSTRTRLSFETAIQRIGGD | ||
| + | VIGFDSGGNTSLAKKGETLADSVQVISSYVDAYVMRHPQEGAARLASEFSNGVPVINAGDGANQHPTQTL | ||
| + | LDLFSIAETQGRLDNLNVAFVGDLKYGRTVHSLTQALAKFDNICFYFVAPEALAMPDYICEELDEAGIKY | ||
| + | QLLTDMEDVIPELDVLYMTRVQKERFDESEYAHIKSAYILTASMLENARDNLKVLHPLPRVDEITVDVDK | ||
| + | TPYAYYFQQAENGVYAREALLALVLNETL | ||
| + | ''Vibrio vulnificus'' | ||
| + | >gi|27364849|ref|NP_760377.1| aspartate carbamoyltransferase catalytic subunit [Vibrio vulnificus CMCP6] | ||
| + | MTNSLYKKHIISIPELSRAELELIVKTAGQLKAEPNPELIKNKVVASCFFEPSTRTRLSFETAIQRIGGD | ||
| + | VIGFDDGGNTSLAKKGETLSDSVQVISNYVDAFVMRHPQEGAARLASEFSNGVPVINAGDGANQHPTQTL | ||
| + | LDLFTISETQGRLDNLNVAFVGDLKYGRTVHSLTQALAKFNNIRFFFVAPDALAMPDYILEDLDEAGISY | ||
| + | SLHTDMETVIPELDILYMTRVQKERFDESEYAHIKSAYILTAALLEGARENLKVLHPLPRVDEITTDVDK | ||
| + | TPHAYYFQQAGNGVYAREALLALVLNESL | ||
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AVIPEVDVLYMTRVQRERFDEAEFRKIQGQYALRADMLKHARPGMKVLHPLPRVDEIAVDVDATPHAYYF | AVIPEVDVLYMTRVQRERFDEAEFRKIQGQYALRADMLKHARPGMKVLHPLPRVDEIAVDVDATPHAYYF | ||
EQAKNGVYARQALLSLVLNETV | EQAKNGVYARQALLSLVLNETV | ||
| + | |||
| + | ''Vibrio cholerae''- bacterium causes cholera | ||
| + | >gi|229527555|ref|ZP_04416947.1| aspartate carbamoyltransferase [Vibrio cholerae 12129(1)] | ||
| + | MLKPPLWGAFLWLLENIGKTIMANSLYQKHIISIAELSRAELELIVKTAGQLKAQPNPELIKHKVVASCF | ||
| + | FEPSTRTRLSFETAIQRIGGSVIGFDNGGNTSLAKKGETLADSVRVIASYVDAFVMRHPQEGAARLASEF | ||
| + | SNGTPVINAGDGSNQHPSQTLLDLYSIYETQGRLDNLDVAFVGDLKYGRTVHSLAQALAKFDNNRFYFVA | ||
| + | PEALAMPDYICEELDEAGVKYQVFSDMESVIPELDILYMTRVQKERFDESEYAHIKSAYILTAAHLSEAR | ||
| + | SNLKVLHPLPRVDEITTDVDKTPHAYYFEQVENGVYAREALLALVLNESL | ||
| + | |||
| + | ''Aeromonas hydrophila''- bacterium mainly found in warm areas | ||
| + | >gi|117619960|ref|YP_858511.1| aspartate carbamoyltransferase catalytic subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] | ||
| + | MQTMTNPLYKKHVISISDLTRPDMELVVATAQRLKAEPDTRLLKDKLVASCFFEASTRTRLSFETAVQRL | ||
| + | GGNIIGFADGGNTSAKKGETLADSIKIIGSYTDAVVMRHPKEGAARLASEFSRVPVINGGDGSNQHPTQT | ||
| + | LLDLFSIHETQGKLDGLNVAFVGDLKYGRTVHSLAQALSLFNCRFFFISPEALAMPDYICEELEEKGIQF | ||
| + | SVHETMEEVMPELDILYMTRVQKERFDETEYKHMAAKFVLEVATLEGAKPTMKILHPLPRVDEIDVAVDK | ||
| + | TPHAYYFQQAENGVYARQALLALVLNETV | ||
| + | |||
| + | ''Picrophilus torridus''- thermoacidiphil archaea | ||
| + | >gi|48478037|ref|YP_023743.1| aspartate carbamoyltransferase catalytic subunit [Picrophilus torridus DSM 9790] | ||
| + | MLKNNSVISINDLSDEDLNLIFNTADSMAGNLKNGSQIKTMSGRIMATLFFEPSTRTRLSFESAMQRLGG | ||
| + | SVISMADSKSSSTAKGETLADTTRMVSSYSDIIVVRHPLEGAARLVQKFSSRPVINAGDGSGEHPTQTLV | ||
| + | DLYTIKKSFGDINNLEISIIGDLRYGRTVHSLLLALSRYNVRINLVSPDLLRLPGHVMSRLKNIKINEYN | ||
| + | DLNNVIESSDVFYVTRIQRERFTDKNDYNKVIGTYGITEKDTEKMKENAIIMHPLPRVDEISSSVDNTKN | ||
| + | AKYFIQAANGIPVRMALISLILGD | ||
| + | |||
| + | ''Tolumonas auensis'' | ||
| + | >gi|237809542|ref|YP_002893982.1| aspartate carbamoyltransferase [Tolumonas auensis DSM 9187] | ||
| + | MANPLYKKNILSIADLSRTDLELVVQTASQLKQSPRHDLLQHKVIASCFFEASTRTRLSFETAVHRLGGS | ||
| + | VIGFADAGNTSLAKKGETLADSVRVITSYTDAFVIRHPQEGAARLSAEFSSVPVINAGDGSNQHPTQTLL | ||
| + | DLFSIYETQGTLDGLKLAFVGDLKYGRTVHSLAQALSLFGARFYFISPEALAMPDYICEELTEKGIEFSF | ||
| + | HDTIEEVMPELDILYMTRVQKERFEESEYRHIAAKFVLSADELKTAKPNMKILHPLPRVDEIHTDVDDTN | ||
| + | HAYYFQQAGNGVYARQALLALVLNEEV | ||
Revision as of 03:50, 6 October 2009
I did a blastp search using our species' ACTase protein sequence, the following where the results. . .
Halophilic Species with Protein Similarity
Haloarcula marismortui protein sequence:
>Haloarcula marismortui ATCC 43049 MRHDHIISAKQLSRGDIETVLDHAADIAADPGAFADRHSDTLLGLLFFEPSTRTKMSFTTAMKRLGGDIV DMGSVESSSVKKGESLADTVRVVEGYTDALVLRHPMEGSAKMASEFVDVPLVNAGDGAGQHPTQTLLDLY TIRENAGFDDLTIGIMGDLKYGRTVHSLAHALTTVDASQHFISPESLQLPRSVRYDLHEAGAGIREHTEL DDILPELDVLYVTRIQAERFPDESEYREVAGQYQIDGDTLAAAKDDLTVMHPLPRVDEIAHDVDETTHAQ YFQQAHNGVPVRMALLDLMLGGDQ
Halorhabdus utahensis protein sequence:
>gi|257051607|ref|YP_003129440.1| aspartate carbamoyltransferase [Halorhabdus utahensis DSM 12940] MRHDHIISAKQLSRSDIEEVLDRAAEIARDPTAFRQRHPGALLGLLFFEPSTRTKMSFSASIKRLGGDIV DMGPVEYSSVKKGESLADTVRVVEGYADALVLRHPMEGSAKMASEFVDVPLINGGDGAGQHPTQTLLDLY TIRENAGLDDLSIGIMGDLKYGRTVHSLAHALTNFDASQHFISPESLRLPRNVRYDLHEEGATIREHTAL DTVLDSLDVLYVTRIQEERFPEESEYRKVAGEYRIDAETLESTRDDLTVLHPLPRVDEIDHDVDATSHAQ YFQQAHNGVPVRMALLDLVLGGESA
Natronomonas pharaonis
>gi|76802397|ref|YP_327405.1| aspartate carbamoyltransferase catalytic subunit [Natronomonas pharaonis DSM 2160] MRHDHLLSAKQLSRGDIEGVLDRAAEIAADPDAVAEKHSDKLLGLLFFEPSTRTKMSFDTAMKRLGGDTV DMGSVDSSSVKKGESLADTVRVIEGYTDAIVLRHPSEGSPKLASEFVDVPVINAGDGAGQHPTQTLLDMY TIRENAGLDDLTIGIMGDLKYGRTVHSLAHALTNFDVSQHFISPESLQLPRSVRYDLHESGAQVREHTDI ESVLETLDVLYVTRIQRERFPDENEYRQVAGEYRIDADLLESAKDDLTVMHPLPRVSEIAADVDETEHAT YFKQAHNGVPVRMALLDEML
Halorubrum lacusprofundi
>gi|222479710|ref|YP_002565947.1| aspartate carbamoyltransferase [Halorubrum lacusprofundi ATCC 49239] MRQDHLITATQLSRDDIEAVLDRAREVADDPAAYADRHAGSVLALCFFEPSTRTRMSFDSAAKRLGMNTI GMGDVDSSSVSKGESLSDTVRVIEGYADALVLRHPSEGAATLAAERVSVPVVNAGDGAGQHPSQTLLDLH TIRENHGLDDLTVGIMGDLKYGRTVHSLAAALTEFDANQHFISPESLRLPRSVRFDLHETGAQVREHTDL EGVLGELDVLYVTRIQKERFPDENEYHRVAGEYQIDAETLEDAPDDLTVMHPLPRVDEIAPDVDETDHAT YFEQAHNGIPVRMALLDILLENAEGDEGMEVDR
Halobacterium salinarum
>gi|169237479|ref|YP_001690683.1| aspartate carbamoyltransferase catalytic subunit [Halobacterium salinarum R1] MDLDHIITSKQLSRADIETVLDRAAEIDADPSAFADRYENTVLGLLFFEPSTRTKMSFDTAMKRLGGDIV DMGSVDSSSVKKGETLADTVRVIEGYADALVLRHPNQGAAQMASEFVDVPLLNAGDGAGHHPTQTLLDLY TIRENAGLEDLTIGIMGDLKYGRTVHSLSRALTNFDVDQHFISPESLQLPRDVVYDLEQESGTRVREHDS FEDVLPELDILYVTRIQRERFPDENEYQKVAGEYQLTATHLEAAKDDLTIMHPLPRVDEIAPEIDDTDHA AYFEQAHNGVPVRMALLDLVLSADGGVDDE
Halogeometricum borinquense
>gi|227879444|ref|ZP_03997306.1| aspartate carbamoyltransferase [Halogeometricum borinquense DSM 11551] MRQDHLISATQLSRDDVEAVLDRAADIDADPAAWRQRHAGTVLGLCFFEPSTRTRMSFDTAMKRLGGRTV DMGPVESSSVKKGESLADTVRVVEGYGDAIVLRHPLEGAAKMASEFVDVPVINAGDGAGQHPTQTLLDLY TIRENAGLDDLTIGIMGDLKYGRTVHSLAEALTNFDARQHFISPESLRLPRNVRYDLHGSGAQVREHTEL SEVLPELDVLYVTRIQRERFPDENEYRKVAGQYQIDADDLSDAKDSLTVMHPLPRVDEIAPEVDETAHAK YFEQAHNAVPVRMALLDMLLEDN
Natrialba magadii
>gi|224822047|ref|ZP_03695167.1| aspartate carbamoyltransferase [Natrialba magadii ATCC 43099] MRHDHLITSKQLSRADIETVLDRAAEIADDPDAVANRHANAVLGLLFFEPSTRTKMSFETAMKRLGGSVV DMGSVESSSVKKGETLADTVRVIEGYADSLVLRHPKQGAAAMACEFVDVPLLNAGDGAGHHPTQTMLDLY TIRENAGLDDLTIGIMGDLKYGRTVHSLSYALTNFDTHQHFISPESLQLPREVVYDLHQQDDTQIREHEA LESVLPSLDVLYVTRIQRERFPDENEYQKVAGEYQIDLETLEDASDDLTIMHPLPRVDEIAPEIDETEHA AYFEQAHNGVPVRMALLDLLLSGGETDE
Haloquadratum walsbyi
>gi|110667833|ref|YP_657644.1| aspartate carbamoyltransferase catalytic subunit [Haloquadratum walsbyi DSM 16790] MHQDHLLSTTQLSREDIETILDRAAAIEMNPDGWEAQYSGTVLGLCFFEPSTRTRMSFDAAMKRLGGRTI DMGSVDNSSISKGETLADTVRVIAGYADAIVLRHPSEGAAKLAAEFVDIPVINAGDGAGQHPTQTLLDLY TMRENVGLDEITVGIAGDLKYGRTVHSLAAALSNFDVRQHFISPESLQLPRNIRYDLHDSGSQVREHTDI ESILPELDVLYVTRIQRERFPDENEYQRVAGQYRVDTDILSHADNNLTVMHPLPRVDEIAPEVDTTEHAA YFEQAHNGVPVRMALLDALIGRAK
Marine Bacterium
Vibrio parahaemolyticus
>gi|153839282|ref|ZP_01991949.1| aspartate carbamoyltransferase [Vibrio parahaemolyticus AQ3810] MSKIPQRSILEIVITVIGKKIMANSLYQKHIISIPELSREELELIVETAGNLKKEPRPELIKNKVVASCF FEPSTRTRLSFETAIQRIGGDVIGFDNDGNTSLAKKGETLSDSVQVISSYVDAFVMRHPQEGAARLASEF SNGVPVINAGDGANQHPTQTLLDLYTIAETQGRLDNLNVAFVGDLKYGRTVHSLTQALAKFNNIRFYFVA PDALAMPEYICEELDEAGIEYSLHTEMEAVIPELDILYMTRVQKERFDESEYAHIKSAYILTAALLKGAR ENLKVLHPLPRVDEITTDVDKTPHAYYFQQAQNGVYARQALLALVLNETL
Vibrio harveyi
>gi|153834576|ref|ZP_01987243.1| aspartate carbamoyltransferase [Vibrio harveyi HY01] MANSLYQKHIISIPELSREELELIVETAGQLKKEPRPELIKNKVVASCFFEPSTRTRLSFETAIQRIGGD VIGFDNGGNTSLAKKGETLSDSVQVISSYVDAFVMRHPQEGAARLASEFSNGVPVINAGDGANQHPTQTL LDLYTIAETQGRLDNLNVAFVGDLKYGRTVHSLTQALAKFNNIRFFFVAPEALAMPDYICEELDEAGIQY SLHTDMESVIPELDILYMTRVQKERFDESEYAHIKSAYILTAALLEGARENLKVLHPLPRVDEITTDVDV TPHAYYFQQAENGVYARQALLALVLNETL
Vibrionales bacterium
>gi|148977756|ref|ZP_01814312.1| aspartate carbamoyltransferase catalytic subunit [Vibrionales bacterium SWAT-3] MANSLYQKHIISIPELSREELELIVQTAGQLKAEPNPELIKNKVVASCFFEPSTRTRLSFETAIQRIGGD VIGFDSGGNTSLAKKGETLADSVQVISSYVDAYVMRHPQEGAARLASEFSNGVPVINAGDGANQHPTQTL LDLFSIAETQGRLDNLNVAFVGDLKYGRTVHSLTQALAKFDNICFYFVAPEALAMPDYICEELDEAGIKY QLLTDMEDVIPELDVLYMTRVQKERFDESEYAHIKSAYILTAALLENARDNLKVLHPLPRVDEITVDVDK TPYAYYFQQAENGVYAREALLALVLNETL
Vibrio splendidus
>gi|218710660|ref|YP_002418281.1| aspartate carbamoyltransferase catalytic subunit [Vibrio splendidus LGP32] MANSLYQKHIISIPELSREELELIVQTAGQLKAEPNPELIKNKVVASCFFEPSTRTRLSFETAIQRIGGD VIGFDSGGNTSLAKKGETLADSVQVISSYVDAYVMRHPQEGAARLASEFSNGVPVINAGDGANQHPTQTL LDLFSIAETQGRLDNLNVAFVGDLKYGRTVHSLTQALAKFDNICFYFVAPEALAMPDYICEELDEAGIKY QLLTDMEDVIPELDVLYMTRVQKERFDESEYAHIKSAYILTASMLENARDNLKVLHPLPRVDEITVDVDK TPYAYYFQQAENGVYAREALLALVLNETL
Vibrio vulnificus
>gi|27364849|ref|NP_760377.1| aspartate carbamoyltransferase catalytic subunit [Vibrio vulnificus CMCP6] MTNSLYKKHIISIPELSRAELELIVKTAGQLKAEPNPELIKNKVVASCFFEPSTRTRLSFETAIQRIGGD VIGFDDGGNTSLAKKGETLSDSVQVISNYVDAFVMRHPQEGAARLASEFSNGVPVINAGDGANQHPTQTL LDLFTISETQGRLDNLNVAFVGDLKYGRTVHSLTQALAKFNNIRFFFVAPDALAMPDYILEDLDEAGISY SLHTDMETVIPELDILYMTRVQKERFDESEYAHIKSAYILTAALLEGARENLKVLHPLPRVDEITTDVDK TPHAYYFQQAGNGVYAREALLALVLNESL
Non-salt loving organisms with top hits
Methanosaeta thermophila- thermophilic archaea
>gi|116754557|ref|YP_843675.1| aspartate carbamoyltransferase catalytic subunit [Methanosaeta thermophila PT] MLKRRHVLSMKDFSREEIDEILETAESLEPYARGKGSDILEGKILALMFFEPSTRTRMSFETAMKRLGGK TINLGSAEASSIAKGESLADTIRVVGGYADAIVIRHPKEGSARLAAEFSPVPVLNAGDGAGHHPTQTLLD LYTIKKESHLDDLSIALVGDLKYGRTVHSLAYALSLYGADIYLVSPPTLRMPEQIIGDLSRMGTRVREVS DLREVIKEVDVLYITRIQRERFPDPVEYNRVARSYSITIRDLEGVKPELRIMHPLPRVDEISPSVDETEH AVYFRQSFYGVPVRMALLKMILED
Archaeoglobus fulgidus- sulfur reducing archaea
>gi|11497726|ref|NP_068947.1| aspartate carbamoyltransferase, catalytic subunit (pyrB) [Archaeoglobus fulgidus DSM 4304] MMRHLISIGDLDREDINYILKKAEEFEDVARGEKKLRILEGKILGNLFFEPSTRTRMSFETAMKRLGGDV INMTAQEASSIAKGETLADTIRVVSGYCDAIVIRHPLEGAARFAAENSSVPVINAGDGAGQHPTQTLLDL YTIKKECGRLDGITIALMGDLKYSRTIHSLIKALALFDMRIYLISPEALALPEDIIEDVSAEIRRARLEE VISEIDVLYVTRIQKERFPDEEEYRKVSGSYRITAETLKSAKDSMIVMHPLPRVDEIHPSVDSTKHARYF QQSFYGVPVRMAILSEVML
Methanocaldococcus fervens- autotrophic hyperthermophilic archaea
>gi|256810708|ref|YP_003128077.1| aspartate carbamoyltransferase [Methanocaldococcus fervens AG86] MRHLISMKDIGKEEILEILEEAKKMEELLNTKRPLKLLEGKILATVFYEPSTRTRLSFETAMKRLGGEVI TMTDLKSSSVAKGESLIDTIRVISGYADIIVLRHPSEGAARLASEYSQVPIINAGDGSNQHPTQTLLDLY TIMREIGKIDGIKITFVGDLKYGRTVHSLVYALSLFNDVEMYFISPKELKMPRDIIEDLKSKNIKFYEKE SLDEIGDDIDVLYVTRIQKERFPDPNEYEKVKGSYKIKKEYVEGKKFIIMHPLPRVDEIDYEVDNLPQAK YFKQSFYGIPVRMAILKKLIEDNE
Chromobacterium violaceum - bacterium
>gi|34495824|ref|NP_900039.1| aspartate carbamoyltransferase catalytic subunit [Chromobacterium violaceum ATCC 12472] MYRKHIISIPDFSREELELVVDTAARLKQSPRGDLLQDKLVASCFFEPSTRTRLSFETAVQRLGGNIIGF ADGGNTSAKKGETLADSIKIISSYTDAVVMRHPKEGAARLASEFSAVPVINGGDGSNQHPTQTLLDLFSI RETQGRLDGLTVAFAGDLKYGRTVHSLAQALSLFGARFYFVSPEVLAMPDYICEELDEKGISYTVADSLE AVIPEVDVLYMTRVQRERFDEAEFRKIQGQYALRADMLKHARPGMKVLHPLPRVDEIAVDVDATPHAYYF EQAKNGVYARQALLSLVLNETV
Vibrio cholerae- bacterium causes cholera
>gi|229527555|ref|ZP_04416947.1| aspartate carbamoyltransferase [Vibrio cholerae 12129(1)] MLKPPLWGAFLWLLENIGKTIMANSLYQKHIISIAELSRAELELIVKTAGQLKAQPNPELIKHKVVASCF FEPSTRTRLSFETAIQRIGGSVIGFDNGGNTSLAKKGETLADSVRVIASYVDAFVMRHPQEGAARLASEF SNGTPVINAGDGSNQHPSQTLLDLYSIYETQGRLDNLDVAFVGDLKYGRTVHSLAQALAKFDNNRFYFVA PEALAMPDYICEELDEAGVKYQVFSDMESVIPELDILYMTRVQKERFDESEYAHIKSAYILTAAHLSEAR SNLKVLHPLPRVDEITTDVDKTPHAYYFEQVENGVYAREALLALVLNESL
Aeromonas hydrophila- bacterium mainly found in warm areas
>gi|117619960|ref|YP_858511.1| aspartate carbamoyltransferase catalytic subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] MQTMTNPLYKKHVISISDLTRPDMELVVATAQRLKAEPDTRLLKDKLVASCFFEASTRTRLSFETAVQRL GGNIIGFADGGNTSAKKGETLADSIKIIGSYTDAVVMRHPKEGAARLASEFSRVPVINGGDGSNQHPTQT LLDLFSIHETQGKLDGLNVAFVGDLKYGRTVHSLAQALSLFNCRFFFISPEALAMPDYICEELEEKGIQF SVHETMEEVMPELDILYMTRVQKERFDETEYKHMAAKFVLEVATLEGAKPTMKILHPLPRVDEIDVAVDK TPHAYYFQQAENGVYARQALLALVLNETV
Picrophilus torridus- thermoacidiphil archaea
>gi|48478037|ref|YP_023743.1| aspartate carbamoyltransferase catalytic subunit [Picrophilus torridus DSM 9790] MLKNNSVISINDLSDEDLNLIFNTADSMAGNLKNGSQIKTMSGRIMATLFFEPSTRTRLSFESAMQRLGG SVISMADSKSSSTAKGETLADTTRMVSSYSDIIVVRHPLEGAARLVQKFSSRPVINAGDGSGEHPTQTLV DLYTIKKSFGDINNLEISIIGDLRYGRTVHSLLLALSRYNVRINLVSPDLLRLPGHVMSRLKNIKINEYN DLNNVIESSDVFYVTRIQRERFTDKNDYNKVIGTYGITEKDTEKMKENAIIMHPLPRVDEISSSVDNTKN AKYFIQAANGIPVRMALISLILGD
Tolumonas auensis
>gi|237809542|ref|YP_002893982.1| aspartate carbamoyltransferase [Tolumonas auensis DSM 9187] MANPLYKKNILSIADLSRTDLELVVQTASQLKQSPRHDLLQHKVIASCFFEASTRTRLSFETAVHRLGGS VIGFADAGNTSLAKKGETLADSVRVITSYTDAFVIRHPQEGAARLSAEFSSVPVINAGDGSNQHPTQTLL DLFSIYETQGTLDGLKLAFVGDLKYGRTVHSLAQALSLFGARFYFISPEALAMPDYICEELTEKGIEFSF HDTIEEVMPELDILYMTRVQKERFEESEYRHIAAKFVLSADELKTAKPNMKILHPLPRVDEIHTDVDDTN HAYYFQQAGNGVYARQALLALVLNEEV
