Difference between revisions of "CRISPR info"
| Line 5: | Line 5: | ||
CRISPR id : tmp_1_Crispr_12 | CRISPR id : tmp_1_Crispr_12 | ||
START crispr position : 2723382 <br> | START crispr position : 2723382 <br> | ||
| − | END crispr position : 2725579 < | + | END crispr position : 2725579 <br> |
| − | Crispr length : 2197 < | + | Crispr length : 2197 <br> |
| − | DR consensus : GTTTCAGACGGACCCTTGTGGGATTGAAGC DR length : 30< | + | DR consensus : GTTTCAGACGGACCCTTGTGGGATTGAAGC DR length : 30<br> |
| − | Number of spacers : 33< | + | Number of spacers : 33<br> |
CRISPR id : tmp_2_Crispr_1</br> | CRISPR id : tmp_2_Crispr_1</br> | ||
Revision as of 15:10, 29 October 2009
Found on CRISPRFInder:
Two confirmed CRISPRs:
CRISPR id : tmp_1_Crispr_12
START crispr position : 2723382
END crispr position : 2725579
Crispr length : 2197
DR consensus : GTTTCAGACGGACCCTTGTGGGATTGAAGC DR length : 30
Number of spacers : 33
CRISPR id : tmp_2_Crispr_1</br> START crispr position : 31920</br> END crispr position : 34849</br>
Crispr length : 2929</br>
DR consensus : GCTTCAATCCCACAAGGGTCCGTCTGAAAC DR length : 30</br> Number of spacers : 44</br>
11 Questionable CRISPRs:
CRISPR id : tmp_1_PossibleCrispr_1 START crispr position : 451036 END crispr position : 451146 Crispr length : 110 DR consensus : CCTCGACCGTGTCGGCCGCGCCGCC DR length : 25 Number of spacers : 1
CRISPR id : tmp_1_PossibleCrispr_2 START crispr position : 451266 END crispr position : 451422
Crispr length : 156
DR consensus : CCTCGACCGTGTCGGCCGCGCCGCC DR length : 25 Number of spacers : 2
CRISPR id : tmp_1_PossibleCrispr_3
START crispr position : 723910
END crispr position : 724040
Crispr length : 130
DR consensus : CCGCCCGAACACGCCGGTCCCGACCACGAGAACGAGAC DR length : 38 Number of spacers : 1
RISPR id : tmp_1_PossibleCrispr_4 START crispr position : 775514 END crispr position : 775595 Crispr length : 81 DR consensus : TGATTCGCCCAGCGAGCGCGTTCGTG DR length : 26 Number of spacers : 1
CRISPR id : tmp_1_PossibleCrispr_5
START crispr position : 1587713
END crispr position : 1587871
Crispr length : 158
DR consensus : TCGAAGGGGCTGTCGCTGTCGGTG DR length : 24
Number of spacers : 2
CRISPR id : tmp_1_PossibleCrispr_6 START crispr position : 1635784 END crispr position : 1635940 Crispr length : 156 DR consensus : CCTCGACCGTGTCGGCCGCGCCGCC DR length : 25 Number of spacers : 2
CRISPR id : tmp_1_PossibleCrispr_7
START crispr position : 1733154
END crispr position : 1733268
Crispr length : 114
DR consensus : GTTCGCCGGACCGTGTGGGTGTCG DR length : 24
Number of spacers : 2
CRISPR id : tmp_1_PossibleCrispr_8 START crispr position : 2087618 END crispr position : 2087725 Crispr length : 107 DR consensus : AGCGCCGGGCGACGACGGGCCAGC DR length : 24 Number of spacers : 1
CRISPR id : tmp_1_PossibleCrispr_9 START crispr position : 2127953 END crispr position : 2128039
Crispr length : 86
DR consensus : CGCTCGCTTCGAGGGCCGACACTCGCT DR length : 27 Number of spacers : 1
CRISPR id : tmp_1_PossibleCrispr_10
START crispr position : 2206888
END crispr position : 2206968
Crispr length : 80
DR consensus : CAGTCCAGTGAGGCGTCTCGTCGTCG DR length : 26
Number of spacers : 1
CRISPR id : tmp_1_PossibleCrispr_11 START crispr position : 2293949 END crispr position : 2294199 Crispr length : 250 DR consensus : CGTTCGCAGCAAAACGGGCCGGAAGGGATTTGAACC DR length : 36 Number of spacers : 2
