Difference between revisions of "CRISPR info"
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Number of spacers : 33<br> | Number of spacers : 33<br> | ||
| − | CRISPR id : tmp_2_Crispr_1< | + | CRISPR id : tmp_2_Crispr_1<br> |
| − | START crispr position : 31920< | + | START crispr position : 31920<br> |
| − | END crispr position : 34849< | + | END crispr position : 34849<br> |
| − | Crispr length : 2929< | + | Crispr length : 2929<br> |
| − | DR consensus : GCTTCAATCCCACAAGGGTCCGTCTGAAAC DR length : 30< | + | DR consensus : GCTTCAATCCCACAAGGGTCCGTCTGAAAC DR length : 30<br> |
| − | Number of spacers : 44< | + | Number of spacers : 44<br> |
'''11 Questionable CRISPRs:''' | '''11 Questionable CRISPRs:''' | ||
| − | CRISPR id : tmp_1_PossibleCrispr_1 | + | CRISPR id : tmp_1_PossibleCrispr_1<br> |
| − | START crispr position : 451036 | + | START crispr position : 451036<br> |
| − | END crispr position : 451146 | + | END crispr position : 451146<br> |
| − | Crispr length : 110 | + | Crispr length : 110<br> |
| − | DR consensus : CCTCGACCGTGTCGGCCGCGCCGCC DR length : 25 | + | DR consensus : CCTCGACCGTGTCGGCCGCGCCGCC DR length : 25<br> |
| − | Number of spacers : 1 | + | Number of spacers : 1<br> |
| − | CRISPR id : tmp_1_PossibleCrispr_2 | + | CRISPR id : tmp_1_PossibleCrispr_2<br> |
| − | START crispr position : 451266 | + | START crispr position : 451266<br> |
| − | END crispr position : 451422 | + | END crispr position : 451422<br> |
| − | Crispr length : 156 | + | Crispr length : 156<br> |
| − | DR consensus : CCTCGACCGTGTCGGCCGCGCCGCC DR length : 25 | + | DR consensus : CCTCGACCGTGTCGGCCGCGCCGCC DR length : 25<br> |
| − | Number of spacers : 2 | + | Number of spacers : 2<br> |
| − | CRISPR id : tmp_1_PossibleCrispr_3 | + | CRISPR id : tmp_1_PossibleCrispr_3<br> |
| − | START crispr position : 723910 | + | START crispr position : 723910<br> |
| − | END crispr position : 724040 | + | END crispr position : 724040<br> |
| − | Crispr length : 130 | + | Crispr length : 130<br> |
| − | DR consensus : CCGCCCGAACACGCCGGTCCCGACCACGAGAACGAGAC DR length : 38 | + | DR consensus : CCGCCCGAACACGCCGGTCCCGACCACGAGAACGAGAC DR length : 38<br> |
| − | Number of spacers : 1 | + | Number of spacers : 1<br> |
| − | RISPR id : tmp_1_PossibleCrispr_4 | + | RISPR id : tmp_1_PossibleCrispr_4<br> |
| − | START crispr position : 775514 | + | START crispr position : 775514<br> |
| − | END crispr position : 775595 | + | END crispr position : 775595<br> |
| − | Crispr length : 81 | + | Crispr length : 81<br> |
| − | DR consensus : TGATTCGCCCAGCGAGCGCGTTCGTG DR length : 26 | + | DR consensus : TGATTCGCCCAGCGAGCGCGTTCGTG DR length : 26<br> |
| − | Number of spacers : 1 | + | Number of spacers : 1<br> |
| − | CRISPR id : tmp_1_PossibleCrispr_5 | + | CRISPR id : tmp_1_PossibleCrispr_5<br> |
| − | START crispr position : 1587713 | + | START crispr position : 1587713<br> |
END crispr position : 1587871 | END crispr position : 1587871 | ||
| − | Crispr length : 158 | + | Crispr length : 158<br> |
| − | DR consensus : TCGAAGGGGCTGTCGCTGTCGGTG DR length : 24 | + | DR consensus : TCGAAGGGGCTGTCGCTGTCGGTG DR length : 24<br> |
| − | Number of spacers : 2 | + | Number of spacers : 2<br> |
| − | CRISPR id : tmp_1_PossibleCrispr_6 | + | CRISPR id : tmp_1_PossibleCrispr_6<br> |
| − | START crispr position : 1635784 | + | START crispr position : 1635784<br> |
| − | END crispr position : 1635940 | + | END crispr position : 1635940<br> |
| − | Crispr length : 156 | + | Crispr length : 156<br> |
| − | DR consensus : CCTCGACCGTGTCGGCCGCGCCGCC DR length : 25 | + | DR consensus : CCTCGACCGTGTCGGCCGCGCCGCC DR length : 25<br> |
| − | Number of spacers : 2 | + | Number of spacers : 2<br> |
| − | CRISPR id : tmp_1_PossibleCrispr_7 | + | CRISPR id : tmp_1_PossibleCrispr_7<br> |
| − | START crispr position : 1733154 | + | START crispr position : 1733154<br> |
| − | END crispr position : 1733268 | + | END crispr position : 1733268<br> |
| − | Crispr length : 114 | + | Crispr length : 114<br> |
| − | DR consensus : GTTCGCCGGACCGTGTGGGTGTCG DR length : 24 | + | DR consensus : GTTCGCCGGACCGTGTGGGTGTCG DR length : 24<br> |
| − | Number of spacers : 2 | + | Number of spacers : 2<br> |
| − | CRISPR id : tmp_1_PossibleCrispr_8 | + | CRISPR id : tmp_1_PossibleCrispr_8<br> |
| − | START crispr position : 2087618 | + | START crispr position : 2087618<br> |
| − | END crispr position : 2087725 | + | END crispr position : 2087725<br> |
| − | Crispr length : 107 | + | Crispr length : 107<br> |
| − | DR consensus : AGCGCCGGGCGACGACGGGCCAGC DR length : 24 | + | DR consensus : AGCGCCGGGCGACGACGGGCCAGC DR length : 24<br> |
| − | Number of spacers : 1 | + | Number of spacers : 1<br> |
| − | CRISPR id : tmp_1_PossibleCrispr_9 | + | CRISPR id : tmp_1_PossibleCrispr_9<br> |
| − | START crispr position : 2127953 | + | START crispr position : 2127953<br> |
| − | END crispr position : 2128039 | + | END crispr position : 2128039<br> |
| − | Crispr length : 86 | + | Crispr length : 86<br> |
| − | DR consensus : CGCTCGCTTCGAGGGCCGACACTCGCT DR length : 27 | + | DR consensus : CGCTCGCTTCGAGGGCCGACACTCGCT DR length : 27<br> |
| − | Number of spacers : 1 | + | Number of spacers : 1<br> |
| − | CRISPR id : tmp_1_PossibleCrispr_10 | + | CRISPR id : tmp_1_PossibleCrispr_10<br> |
| − | START crispr position : 2206888 | + | START crispr position : 2206888<br> |
| − | END crispr position : 2206968 | + | END crispr position : 2206968<br> |
| − | Crispr length : 80 | + | Crispr length : 80<br> |
| − | DR consensus : CAGTCCAGTGAGGCGTCTCGTCGTCG DR length : 26 | + | DR consensus : CAGTCCAGTGAGGCGTCTCGTCGTCG DR length : 26<br> |
| − | Number of spacers : 1 | + | Number of spacers : 1<br> |
| − | CRISPR id : tmp_1_PossibleCrispr_11 | + | CRISPR id : tmp_1_PossibleCrispr_11<br> |
| − | START crispr position : 2293949 | + | START crispr position : 2293949<br> |
| − | END crispr position : 2294199 | + | END crispr position : 2294199<br> |
| − | Crispr length : 250 | + | Crispr length : 250<br> |
| − | DR consensus : CGTTCGCAGCAAAACGGGCCGGAAGGGATTTGAACC DR length : 36 | + | DR consensus : CGTTCGCAGCAAAACGGGCCGGAAGGGATTTGAACC DR length : 36<br> |
| − | Number of spacers : 2 | + | Number of spacers : 2<br> |
Revision as of 15:11, 29 October 2009
Found on CRISPRFInder:
Two confirmed CRISPRs:
CRISPR id : tmp_1_Crispr_12
START crispr position : 2723382
END crispr position : 2725579
Crispr length : 2197
DR consensus : GTTTCAGACGGACCCTTGTGGGATTGAAGC DR length : 30
Number of spacers : 33
CRISPR id : tmp_2_Crispr_1
START crispr position : 31920
END crispr position : 34849
Crispr length : 2929
DR consensus : GCTTCAATCCCACAAGGGTCCGTCTGAAAC DR length : 30
Number of spacers : 44
11 Questionable CRISPRs:
CRISPR id : tmp_1_PossibleCrispr_1
START crispr position : 451036
END crispr position : 451146
Crispr length : 110
DR consensus : CCTCGACCGTGTCGGCCGCGCCGCC DR length : 25
Number of spacers : 1
CRISPR id : tmp_1_PossibleCrispr_2
START crispr position : 451266
END crispr position : 451422
Crispr length : 156
DR consensus : CCTCGACCGTGTCGGCCGCGCCGCC DR length : 25
Number of spacers : 2
CRISPR id : tmp_1_PossibleCrispr_3
START crispr position : 723910
END crispr position : 724040
Crispr length : 130
DR consensus : CCGCCCGAACACGCCGGTCCCGACCACGAGAACGAGAC DR length : 38
Number of spacers : 1
RISPR id : tmp_1_PossibleCrispr_4
START crispr position : 775514
END crispr position : 775595
Crispr length : 81
DR consensus : TGATTCGCCCAGCGAGCGCGTTCGTG DR length : 26
Number of spacers : 1
CRISPR id : tmp_1_PossibleCrispr_5
START crispr position : 1587713
END crispr position : 1587871
Crispr length : 158
DR consensus : TCGAAGGGGCTGTCGCTGTCGGTG DR length : 24
Number of spacers : 2
CRISPR id : tmp_1_PossibleCrispr_6
START crispr position : 1635784
END crispr position : 1635940
Crispr length : 156
DR consensus : CCTCGACCGTGTCGGCCGCGCCGCC DR length : 25
Number of spacers : 2
CRISPR id : tmp_1_PossibleCrispr_7
START crispr position : 1733154
END crispr position : 1733268
Crispr length : 114
DR consensus : GTTCGCCGGACCGTGTGGGTGTCG DR length : 24
Number of spacers : 2
CRISPR id : tmp_1_PossibleCrispr_8
START crispr position : 2087618
END crispr position : 2087725
Crispr length : 107
DR consensus : AGCGCCGGGCGACGACGGGCCAGC DR length : 24
Number of spacers : 1
CRISPR id : tmp_1_PossibleCrispr_9
START crispr position : 2127953
END crispr position : 2128039
Crispr length : 86
DR consensus : CGCTCGCTTCGAGGGCCGACACTCGCT DR length : 27
Number of spacers : 1
CRISPR id : tmp_1_PossibleCrispr_10
START crispr position : 2206888
END crispr position : 2206968
Crispr length : 80
DR consensus : CAGTCCAGTGAGGCGTCTCGTCGTCG DR length : 26
Number of spacers : 1
CRISPR id : tmp_1_PossibleCrispr_11
START crispr position : 2293949
END crispr position : 2294199
Crispr length : 250
DR consensus : CGTTCGCAGCAAAACGGGCCGGAAGGGATTTGAACC DR length : 36
Number of spacers : 2
