Difference between revisions of "Burkholderia phage Virus Hit from Spacer 14 in Crispr One: Blast Alignment to Other Halophiles"

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[[Image:virus2HS.jpg]]
 
[[Image:virus2HS.jpg]]
 
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'''Haloarula californiae''': downloaded this sequence of the large contigs from the halophile genome site with the eight other species on it
 
 
 
 
 
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Haloferax volcanii=
 
 
 
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Haloarcula sinaiiensis
 
  
  
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Haloferax mediterranei
 
  
  
 
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Haloferax mucosum
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Haloarcula sinaiiensis
 
 
 
 
 
 
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Haloferax sulfurifontis
 

Revision as of 02:38, 18 November 2009

Accession Number of this Virus= EU307292.1- only partial sequence!!!!!!! thats just what we have

What species does this virus infect? Blastn against nr/nt database. . .

Virus2.jpg

Our species does not show up because different parameters for short sequence when we blasted the spacer


Blasted against other halophiles to determine if other halophiles have segments of this viral genome in its spacers and genome in general. . .

Halorhabdus utahensis: Accession number determined from NCBI: NC_013158.1

Virus2HU.jpg



Halobacterium salinarium R1: Accession number determined from NCBI: NC_010364

Virus2HS.jpg



Haloarcula vallismortis




Haloarcula sinaiiensis