Difference between revisions of "CRISPR info"

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== Found on CRISPRFInder: ==
+
[[Direct Repeats]]
  
'''Two confirmed CRISPRs:'''
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[[Blasting Spacers for Our Genome]]
  
CRISPR id : tmp_1_Crispr_12
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[[Spacers for Other Species]]
START crispr position : 2723382 <br>
 
END crispr position : 2725579 </br>
 
Crispr length : 2197 </br>
 
DR consensus : GTTTCAGACGGACCCTTGTGGGATTGAAGC DR length : 30</br>
 
Number of spacers : 33</br>
 
  
CRISPR id : tmp_2_Crispr_1</br>
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[[Blasting Spacers for Haloferax mediterranei]]
START crispr position : 31920</br>
 
END crispr position : 34849</br>
 
Crispr length : 2929</br>
 
DR consensus : GCTTCAATCCCACAAGGGTCCGTCTGAAAC DR length : 30</br>
 
Number of spacers : 44</br>
 
  
'''11 Questionable CRISPRs:'''
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[[CRISPR-associated Proteins]]
 
 
CRISPR id : tmp_1_PossibleCrispr_1
 
START crispr position : 451036
 
END crispr position : 451146
 
Crispr length : 110
 
DR consensus : CCTCGACCGTGTCGGCCGCGCCGCC DR length : 25
 
Number of spacers : 1
 
 
 
CRISPR id : tmp_1_PossibleCrispr_2
 
START crispr position : 451266
 
END crispr position : 451422
 
Crispr length : 156
 
DR consensus : CCTCGACCGTGTCGGCCGCGCCGCC DR length : 25
 
Number of spacers : 2
 
 
 
 
 
CRISPR id : tmp_1_PossibleCrispr_3
 
START crispr position : 723910
 
END crispr position : 724040
 
Crispr length : 130
 
DR consensus : CCGCCCGAACACGCCGGTCCCGACCACGAGAACGAGAC DR length : 38
 
Number of spacers : 1
 
 
 
RISPR id : tmp_1_PossibleCrispr_4
 
START crispr position : 775514
 
END crispr position : 775595
 
Crispr length : 81
 
DR consensus : TGATTCGCCCAGCGAGCGCGTTCGTG DR length : 26
 
Number of spacers : 1
 
 
 
 
 
CRISPR id : tmp_1_PossibleCrispr_5
 
START crispr position : 1587713
 
END crispr position : 1587871
 
Crispr length : 158
 
DR consensus : TCGAAGGGGCTGTCGCTGTCGGTG DR length : 24
 
Number of spacers : 2
 
 
 
 
 
 
 
CRISPR id : tmp_1_PossibleCrispr_6
 
START crispr position : 1635784
 
END crispr position : 1635940
 
Crispr length : 156
 
DR consensus : CCTCGACCGTGTCGGCCGCGCCGCC DR length : 25
 
Number of spacers : 2
 
 
 
 
 
CRISPR id : tmp_1_PossibleCrispr_7
 
START crispr position : 1733154
 
END crispr position : 1733268
 
Crispr length : 114
 
DR consensus : GTTCGCCGGACCGTGTGGGTGTCG DR length : 24
 
Number of spacers : 2
 
 
 
CRISPR id : tmp_1_PossibleCrispr_8
 
START crispr position : 2087618
 
END crispr position : 2087725
 
Crispr length : 107
 
DR consensus : AGCGCCGGGCGACGACGGGCCAGC DR length : 24
 
Number of spacers : 1
 
 
 
CRISPR id : tmp_1_PossibleCrispr_9
 
START crispr position : 2127953
 
END crispr position : 2128039
 
Crispr length : 86
 
DR consensus : CGCTCGCTTCGAGGGCCGACACTCGCT DR length : 27
 
Number of spacers : 1
 
 
 
 
 
CRISPR id : tmp_1_PossibleCrispr_10
 
START crispr position : 2206888
 
END crispr position : 2206968
 
Crispr length : 80
 
DR consensus : CAGTCCAGTGAGGCGTCTCGTCGTCG DR length : 26
 
Number of spacers : 1
 
 
 
CRISPR id : tmp_1_PossibleCrispr_11
 
START crispr position : 2293949
 
END crispr position : 2294199
 
Crispr length : 250
 
DR consensus : CGTTCGCAGCAAAACGGGCCGGAAGGGATTTGAACC DR length : 36
 
Number of spacers : 2
 

Latest revision as of 17:02, 19 November 2009

Direct Repeats

Blasting Spacers for Our Genome

Spacers for Other Species

Blasting Spacers for Haloferax mediterranei

CRISPR-associated Proteins