Difference between revisions of "General Statistical Calculation Tool"
From GcatWiki
(Created page with '=Features= ==Calculate Distribution of Read Lengths== ==Calculate How Many Substrings== *http://genometools.org/index.html - for both k-mer calculation tool and substring tool ==…') |
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==Estimate Genome Size== | ==Estimate Genome Size== | ||
*http://seqanswers.com/forums/showthread.php?t=11434 | *http://seqanswers.com/forums/showthread.php?t=11434 | ||
| + | =Motivation= | ||
| + | http://phagesdb.org/sort/ - it looks like genome size and gc% roughly correlates to the phage cluster | ||
Revision as of 14:18, 1 June 2011
Contents
[hide]Features
Calculate Distribution of Read Lengths
Calculate How Many Substrings
- http://genometools.org/index.html - for both k-mer calculation tool and substring tool
Calculate N50
Calculate GC Content
Calculate k-mer Distributions
- http://genometools.org/index.html - for both k-mer calculation tool and substring tool
- Jellyfish - more recent k-mer counting tool
Estimate Genome Size
Motivation
http://phagesdb.org/sort/ - it looks like genome size and gc% roughly correlates to the phage cluster
