Difference between revisions of "General Statistical Calculation Tool"

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(Estimate Genome Size)
(Calculate N50)
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==Calculate N50==
 
==Calculate N50==
 +
*http://code.google.com/p/biopieces/wiki/calc_N50 - part of biopieces
 +
 
==Calculate GC Content==
 
==Calculate GC Content==
 
==Calculate k-mer Distributions==
 
==Calculate k-mer Distributions==

Revision as of 15:59, 1 June 2011

Features

Calculate Distribution of Read Lengths

Calculate How Many Substrings

Calculate N50

Calculate GC Content

Calculate k-mer Distributions

Estimate Genome Size

Motivation

http://phagesdb.org/sort/ - it looks like genome size and gc% roughly correlates to the phage cluster