Difference between revisions of "Summer 2012 SynBio Project (Davidson and MWSU)"
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<center>'''Summer 2012 Synthetic Biology Project: MWSU and Davidson College'''</center><br><br> | <center>'''Summer 2012 Synthetic Biology Project: MWSU and Davidson College'''</center><br><br> | ||
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+ | |||
+ | == PPT Presentations == | ||
This PPT file contains all the slides from student presentations addressing the idea proposed by MWSU. <br> | This PPT file contains all the slides from student presentations addressing the idea proposed by MWSU. <br> | ||
[[Media:Reports_on_Circuits.pptx]] | [[Media:Reports_on_Circuits.pptx]] | ||
+ | |||
+ | This PPT contains slides summarizing some of the best and most complicated papers from Week 11. <br> | ||
+ | [[Media:Week_11.pptx]] | ||
+ | |||
+ | |||
+ | |||
+ | |||
+ | == Papers == | ||
+ | Discuss this paper about [http://www.jbioleng.org/content/pdf/1754-1611-5-12.pdf data sheets for standardized parts]. | ||
+ | |||
+ | ''Older Lab Papers'' | ||
+ | * '''Engineering bacteria to solve the Burnt Pancake Problem'''. <br> | ||
+ | [http://www.jbioleng.org/content/2/1/8 Haynes, Karmella, et al.]<br> | ||
+ | Journal of Biological Engineering. Vol. 2(8): 1 – 12. | ||
+ | |||
+ | * '''Solving a Hamiltonian Path Problem with a Bacterial Computer'''. <br> | ||
+ | [http://www.jbioleng.org/content/3/1/11 Baumgardner, Jordan et al.]<br> | ||
+ | Journal of Biological Engineering. Vol. 3:11 | ||
+ | |||
+ | *'''Bacterial Hash Function Using DNA-Based XOR Logic Reveals Unexpected Behavior of the LuxR Promoter'''.<br> | ||
+ | [http://www.ibc7.org/article/journal_v.php?sid=265 Brianna Pearson*, Kin H. Lau* et al.] <br> | ||
+ | Interdisciplinary Bio Central. Vol. 3, article no. 10.<br> | ||
+ | [http://www.bio.davidson.edu/courses/genomics/2008/DeLoache/TimeDelayedAmpRDiffusionWithTimes.avi Time Delayed Growth Movie] | ||
+ | |||
+ | * '''DNA assembly for synthetic biology: from parts to pathways and beyond'''<br> | ||
+ | [http://gcat.davidson.edu/mediawiki-1.15.0/images/c/ca/Synthetic_assembly_overview.pdf Tom Ellis, Tom Adieac and Geoff S. Baldwin] <br> | ||
+ | Integr. Biol., 2011, 3, 109–118 | ||
+ | |||
+ | Network Papers | ||
+ | * [http://www.sciencemag.org/content/309/5743/2010.full.pdf '''Noise in Gene Expression: Origins, Consequences, and Control'''] <br> | ||
+ | Jonathan M. Raser and Erin K. O’Shea <br> | ||
+ | Science. Vol. 309, page 2010<br> | ||
+ | |||
+ | * [http://www.sciencemag.org/content/333/6047/1244.full.pdf '''Synthetic Biology: Integrated Gene Circuits'''] <br> | ||
+ | Nagarajan Nandagopal and Michael B. Elowitz<br> | ||
+ | Science. Vol. 333, page 1244. <br> | ||
+ | |||
+ | * [http://www.sciencemag.org/content/298/5594/824.full.pdf '''Network Motifs: Simple Building Blocks of Complex Networks'''] <br> | ||
+ | R. Milo, S. Shen-Orr, et al<br> | ||
+ | Science. Vol. 298, page 824.<br> | ||
+ | |||
+ | |||
+ | Ethics Papers | ||
+ | * [http://www.nature.com/news/2010/100616/pdf/465867a.pdf '''Talking the Talk'''] <br> | ||
+ | Colin Mcilswain <br> | ||
+ | Nature. Vol 465, page 867. |
Revision as of 14:18, 17 May 2012
PPT Presentations
This PPT file contains all the slides from student presentations addressing the idea proposed by MWSU.
Media:Reports_on_Circuits.pptx
This PPT contains slides summarizing some of the best and most complicated papers from Week 11.
Media:Week_11.pptx
Papers
Discuss this paper about data sheets for standardized parts.
Older Lab Papers
- Engineering bacteria to solve the Burnt Pancake Problem.
Haynes, Karmella, et al.
Journal of Biological Engineering. Vol. 2(8): 1 – 12.
- Solving a Hamiltonian Path Problem with a Bacterial Computer.
Baumgardner, Jordan et al.
Journal of Biological Engineering. Vol. 3:11
- Bacterial Hash Function Using DNA-Based XOR Logic Reveals Unexpected Behavior of the LuxR Promoter.
Brianna Pearson*, Kin H. Lau* et al.
Interdisciplinary Bio Central. Vol. 3, article no. 10.
Time Delayed Growth Movie
- DNA assembly for synthetic biology: from parts to pathways and beyond
Tom Ellis, Tom Adieac and Geoff S. Baldwin
Integr. Biol., 2011, 3, 109–118
Network Papers
Jonathan M. Raser and Erin K. O’Shea
Science. Vol. 309, page 2010
Nagarajan Nandagopal and Michael B. Elowitz
Science. Vol. 333, page 1244.
R. Milo, S. Shen-Orr, et al
Science. Vol. 298, page 824.
Ethics Papers
Colin Mcilswain
Nature. Vol 465, page 867.