Difference between revisions of "DM Notes 2.18.16"
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*Code results are online under 2.18 (Dr. C and Dr. H results). The code makes CSVs with gene names. Working on 'if I select one gene, what genes are closely related to that one?' CSV has 28 genes. | *Code results are online under 2.18 (Dr. C and Dr. H results). The code makes CSVs with gene names. Working on 'if I select one gene, what genes are closely related to that one?' CSV has 28 genes. | ||
*Contigs on that list are good candidates to pursue further. | *Contigs on that list are good candidates to pursue further. | ||
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+ | Blast2GO: FASTA sequences->NCBI->GO annotations | ||
+ | |||
+ | Intestine folk: working on checking samples to see if they're good | ||
+ | |||
+ | Liver folk: working on checking liver samples | ||
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+ | '''Our team:''' Working with map_to_GO script today. | ||
Back to home [[Dylan Maghini]] | Back to home [[Dylan Maghini]] |
Revision as of 18:52, 18 February 2016
Dr. Campbell and Dr. Heyer's Progress: Looking at heat map. They had been trying to adjust so that Euclidean distance isn't what determines correlation (can be different magnitudes, but still correlated). Now it's measured by correlation.
- Got rid of scale, but gave it absolute values. Yields about 2 horizontal rows (blue figure).
- But, when they eliminated Euclidean distance, first attempt yielded large red box with two rows showing other coloring. Changed coloring to see on normalized scale. p <=.01
- Code results are online under 2.18 (Dr. C and Dr. H results). The code makes CSVs with gene names. Working on 'if I select one gene, what genes are closely related to that one?' CSV has 28 genes.
- Contigs on that list are good candidates to pursue further.
Blast2GO: FASTA sequences->NCBI->GO annotations
Intestine folk: working on checking samples to see if they're good
Liver folk: working on checking liver samples
Our team: Working with map_to_GO script today.
Back to home Dylan Maghini