Difference between revisions of "2 misc. RNA genes"
From GcatWiki
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[http://imgweb.jgi-psf.org/cgi-bin/img_edu_v260/main.cgi?section=GeneDetail&page=geneDetail&gene_oid=2500590732 RNaseP_arch] | [http://imgweb.jgi-psf.org/cgi-bin/img_edu_v260/main.cgi?section=GeneDetail&page=geneDetail&gene_oid=2500590732 RNaseP_arch] | ||
| − | -BLASTn finds most similarity with a gene from the halobacteria <i>Haloferax volcanii</i> | + | -BLASTn finds the most similarity with a gene from the halobacteria <i>Haloferax volcanii</i> |
<br>-It matches a partial coding sequence for the [http://en.wikipedia.org/wiki/RNase_P Ribonuclease P] gene | <br>-It matches a partial coding sequence for the [http://en.wikipedia.org/wiki/RNase_P Ribonuclease P] gene | ||
<br>-[http://www.mbio.ncsu.edu/RNaseP/rna/archaea/archaea-RNA-align.gb This site] shows alignments for all known archaeal ribonuclease P. You can align them by hand and see that our [http://imgweb.jgi-psf.org/cgi-bin/img_edu_v260/main.cgi?exportGenes=1&exportType=nucleic&gene_oid=2500590732&up_stream=0&down_stream=0 sequence] closely matches the sequences in this group, especially ones like H. volcanii. | <br>-[http://www.mbio.ncsu.edu/RNaseP/rna/archaea/archaea-RNA-align.gb This site] shows alignments for all known archaeal ribonuclease P. You can align them by hand and see that our [http://imgweb.jgi-psf.org/cgi-bin/img_edu_v260/main.cgi?exportGenes=1&exportType=nucleic&gene_oid=2500590732&up_stream=0&down_stream=0 sequence] closely matches the sequences in this group, especially ones like H. volcanii. | ||
Revision as of 03:11, 2 September 2008
-BLASTn finds the most similarity with a gene from the halobacteria Haloferax volcanii
-A signal recognition particle contains 7 subunits: six polypeptide components and one 7S RNA component (PubMed)
-Our miscellaneous RNA gene probably encodes the 7S RNA subunit of the signal recognition particle
-BLASTn finds the most similarity with a gene from the halobacteria Haloferax volcanii
-It matches a partial coding sequence for the Ribonuclease P gene
-This site shows alignments for all known archaeal ribonuclease P. You can align them by hand and see that our sequence closely matches the sequences in this group, especially ones like H. volcanii.
