Difference between revisions of "2 misc. RNA genes"
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-BLASTn finds the most similarity with a gene from the halobacteria <i>Haloferax volcanii</i> | -BLASTn finds the most similarity with a gene from the halobacteria <i>Haloferax volcanii</i> | ||
<br>-It matches a partial coding sequence for the [http://en.wikipedia.org/wiki/RNase_P Ribonuclease P] gene | <br>-It matches a partial coding sequence for the [http://en.wikipedia.org/wiki/RNase_P Ribonuclease P] gene | ||
| − | <br>-The RNaseP Database at NC State shows alignments for all known archaeal ribonuclease P. You can align them by hand and see that our [http://imgweb.jgi-psf.org/cgi-bin/img_edu_v260/main.cgi?exportGenes=1&exportType=nucleic&gene_oid=2500590732&up_stream=0&down_stream=0 sequence] closely matches the [http://www.mbio.ncsu.edu/RNaseP/rna/archaea/archaea-RNA-align.gb sequences | + | <br>-The RNaseP Database at NC State shows alignments for all known archaeal ribonuclease P. You can align them by hand and see that our [http://imgweb.jgi-psf.org/cgi-bin/img_edu_v260/main.cgi?exportGenes=1&exportType=nucleic&gene_oid=2500590732&up_stream=0&down_stream=0 sequence], with appropriate gaps added, closely matches the [http://www.mbio.ncsu.edu/RNaseP/rna/archaea/archaea-RNA-align.gb sequences in this database], especially ones like H. volcanii. |
Revision as of 03:13, 2 September 2008
-BLASTn finds the most similarity with a gene from the halobacteria Haloferax volcanii
-A signal recognition particle contains 7 subunits: six polypeptide components and one 7S RNA component (PubMed)
-Our miscellaneous RNA gene probably encodes the 7S RNA subunit of the signal recognition particle
-BLASTn finds the most similarity with a gene from the halobacteria Haloferax volcanii
-It matches a partial coding sequence for the Ribonuclease P gene
-The RNaseP Database at NC State shows alignments for all known archaeal ribonuclease P. You can align them by hand and see that our sequence, with appropriate gaps added, closely matches the sequences in this database, especially ones like H. volcanii.
