Difference between revisions of "2 misc. RNA genes"
From GcatWiki
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[http://imgweb.jgi-psf.org/cgi-bin/img_edu_v260/main.cgi?section=GeneDetail&page=geneDetail&gene_oid=2500590731 2500590731 SRP_euk_arch] | [http://imgweb.jgi-psf.org/cgi-bin/img_edu_v260/main.cgi?section=GeneDetail&page=geneDetail&gene_oid=2500590731 2500590731 SRP_euk_arch] | ||
| − | -BLASTn finds the most similarity with | + | -BLASTn finds the most similarity with [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?tool=portal&db=nuccore&term=&query_key=5&dopt=gb&dispmax=20&page=1&qty=1&WebEnv=0hs0riFK7DE6d4viRhGNLu_NiamTDnr9NZfTQXjKgQfjMMkb0J8n9lY2tk4ODb2HZC2NMCg_PzCJKb1d%4025627E3E8BCA77A0_0135SID&WebEnvRq=1 this gene] from the halobacteria <i>Haloferax volcanii</i> |
<br>-A signal recognition particle contains 7 subunits: six polypeptide components and one 7S RNA component ([http://www.ncbi.nlm.nih.gov/pubmed/6181418 PubMed]) | <br>-A signal recognition particle contains 7 subunits: six polypeptide components and one 7S RNA component ([http://www.ncbi.nlm.nih.gov/pubmed/6181418 PubMed]) | ||
<br>-Our miscellaneous RNA gene probably encodes the 7S RNA subunit of the signal recognition particle | <br>-Our miscellaneous RNA gene probably encodes the 7S RNA subunit of the signal recognition particle | ||
Revision as of 03:45, 2 September 2008
-BLASTn finds the most similarity with this gene from the halobacteria Haloferax volcanii
-A signal recognition particle contains 7 subunits: six polypeptide components and one 7S RNA component (PubMed)
-Our miscellaneous RNA gene probably encodes the 7S RNA subunit of the signal recognition particle
-BLASTn finds the most similarity with a gene from the halobacteria Haloferax volcanii
-It matches a partial coding sequence for the Ribonuclease P gene
-The RNaseP Database at NC State shows alignments for all known archaeal ribonuclease P. You can align them by hand and see that our sequence, with appropriate gaps added, closely matches the sequences in this database, especially ones like H. volcanii.
