Difference between revisions of "Protein of unknown function ("
From GcatWiki
(→Blast) |
|||
| (One intermediate revision by the same user not shown) | |||
| Line 3: | Line 3: | ||
=Blast= | =Blast= | ||
Megablast confirmed that the sequence is 100% identical to one in (''Halomicrobium mukohataei''). Blast also showed that the microbe (''Halorhabdus utahensis'') has a sequence that is 100% identical to this particular gene, and that (''Saccharopolyspora erythraea'') has two identified genes with sequences similar to those found within this sequence (shown below). | Megablast confirmed that the sequence is 100% identical to one in (''Halomicrobium mukohataei''). Blast also showed that the microbe (''Halorhabdus utahensis'') has a sequence that is 100% identical to this particular gene, and that (''Saccharopolyspora erythraea'') has two identified genes with sequences similar to those found within this sequence (shown below). | ||
| + | |||
| + | [[Image:Mr22.PNG]] | ||
=GC Content= | =GC Content= | ||
The GC content for this gene is 70% and the GC content for our species' genome is 66%. These percentages are fairly similar, thus ruling out the possibility the possibility that this is an outside gene. There may however exist paralogs and orthologs to this gene. | The GC content for this gene is 70% and the GC content for our species' genome is 66%. These percentages are fairly similar, thus ruling out the possibility the possibility that this is an outside gene. There may however exist paralogs and orthologs to this gene. | ||
Latest revision as of 12:29, 8 September 2009
Conserved hypothetical protein TIGR00162 644030738
Blast
Megablast confirmed that the sequence is 100% identical to one in (Halomicrobium mukohataei). Blast also showed that the microbe (Halorhabdus utahensis) has a sequence that is 100% identical to this particular gene, and that (Saccharopolyspora erythraea) has two identified genes with sequences similar to those found within this sequence (shown below).
Error creating thumbnail: Unable to save thumbnail to destination
GC Content
The GC content for this gene is 70% and the GC content for our species' genome is 66%. These percentages are fairly similar, thus ruling out the possibility the possibility that this is an outside gene. There may however exist paralogs and orthologs to this gene.
