Difference between revisions of "DNA computing"
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| + | '''DNA Computing PPT Concepts'''<br> | ||
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| + | Golden Gate HPP Davidson Concept: [[Media:GoldenGate_HPP.pptx]] | ||
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| + | Golden Gate HPP MWSU Concept: [[Media:HPP_DNA_computer_MWSU_2011.pptx]] | ||
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| + | Golden Gate Generic Primers: [[Media:ggsdiagram.pptx ]] | ||
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| + | Golden Gate Cre Primers: [[Media:PRIMERDESIGN.docx ]] | ||
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| + | Golden Gate Bla Primers: [[Media:primersforbla.docx ]] | ||
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| + | Golden Gate CAT Primers: [[Media:OLIGOSFORCATGENECONSTRUCTS.doc ]] | ||
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| + | <hr> | ||
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'''DNA Computing Papers'''<br> | '''DNA Computing Papers'''<br> | ||
| − | [http://gcat.davidson.edu/mediawiki-1.15.0/images/6/62/Adelman_1994.pdf Adleman 1994]<br> | + | [http://gcat.davidson.edu/mediawiki-1.15.0/images/6/62/Adelman_1994.pdf Adleman 1994] First DNA computer, used to solve 7-node, 14-edge HPP<br> |
[http://gcat.davidson.edu/mediawiki-1.15.0/images/2/22/Benneson_review_2009.pdf Benneson review 2009] Review of DNA computers in terms of Tiling systems, State Machines, Logic Networks. <br> | [http://gcat.davidson.edu/mediawiki-1.15.0/images/2/22/Benneson_review_2009.pdf Benneson review 2009] Review of DNA computers in terms of Tiling systems, State Machines, Logic Networks. <br> | ||
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[http://gcat.davidson.edu/mediawiki-1.15.0/images/4/44/Benneson_2003.pdf Benneson 2003] DNA computer using restriction and ligation<br> | [http://gcat.davidson.edu/mediawiki-1.15.0/images/4/44/Benneson_2003.pdf Benneson 2003] DNA computer using restriction and ligation<br> | ||
| − | [http://gcat.davidson.edu/mediawiki-1.15.0/images/4/45/Bonehetal_1996.pdf | + | [http://gcat.davidson.edu/mediawiki-1.15.0/images/4/45/Bonehetal_1996.pdf Boneh 1996] Review on the computational power of DNA<br> |
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| + | [http://gcat.davidson.edu/mediawiki-1.15.0/images/e/e3/Adleman_SciAm.pdf Adleman Scientific American] Good introduction to Adleman HPP experiment<br> | ||
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| + | [http://gcat.davidson.edu/mediawiki-1.15.0/images/f/fa/Adleman_Data_Encryption_Standard_1999.pdf Adleman Data Encryption Standard 1999] Proposal to use the Sticker Model to attack the US Data Encryption Standard<br> | ||
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| + | [http://gcat.davidson.edu/mediawiki-1.15.0/images/d/d5/Aspects_of_Biomolecular_Computing.pdf] An overview of Biomolecular computing including a summary of DNA computing and a section on the limitations of such computing <br> | ||
| − | [http://gcat.davidson.edu/mediawiki-1.15.0/images/ | + | [http://gcat.davidson.edu/mediawiki-1.15.0/images/0/07/DNA_computing_in_vitro_and_in_vivo.pdf] DNA computing in vitro and in vivo. An overview illustrating the differences between in vitro and in vivo DNA computing. 2001. |
| − | [http://gcat.davidson.edu/mediawiki-1.15.0/images/ | + | [http://gcat.davidson.edu/mediawiki-1.15.0/images/7/77/DNA_Computing_on_surface.pdf] The principle of the technique has been demonstrated experimentally for a simple example of the Hamiltonian path problem <br> |
| − | [http://gcat.davidson.edu/mediawiki-1.15.0/images/6/6f/Ravinderjit_2000.pdf Ravinderjit 2000]<br> | + | [http://gcat.davidson.edu/mediawiki-1.15.0/images/6/6f/Ravinderjit_2000.pdf Ravinderjit 2000] Using a gel based DNA computer to solve a 6-variable 11-clause 3-SAT problem<br> |
Molecular Computation by Hairpin Formation; [http://gcat.davidson.edu/GcatWiki/images/3/39/Sakamoto_DNA_computer_3SAT.pdf Sakamoto et al.] | Molecular Computation by Hairpin Formation; [http://gcat.davidson.edu/GcatWiki/images/3/39/Sakamoto_DNA_computer_3SAT.pdf Sakamoto et al.] | ||
| − | + | [http://gcat.davidson.edu/mediawiki-1.15.0/images/8/8b/2002_adleman.pdf 2002 Adleman.] Solution of a 20-Variable Problem on a DNA Computer. | |
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| + | [http://gcat.davidson.edu/mediawiki-1.15.0/images/d/d2/2011_physics.pdf 2011 Shu] DNA-Based Computing of Strategic Assignment Problems, | ||
Criticism of DNA-Based Computing of Strategic Assignment Problems: http://arstechnica.com/science/news/2011/05/is-dna-computing-going-to-terminate-internet-banking.ars | Criticism of DNA-Based Computing of Strategic Assignment Problems: http://arstechnica.com/science/news/2011/05/is-dna-computing-going-to-terminate-internet-banking.ars | ||
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| + | [http://gcat.davidson.edu/mediawiki-1.15.0/images/3/35/DNA_circuits.pdf 2011 Qian] Scaling Up Digital Circuit Computation with DNA Strand Displacement Cascades. 2011 and its commentary in Science. [http://gcat.davidson.edu/mediawiki-1.15.0/images/7/72/DNA_circuits_Comm.pdf 2011 Reif] | ||
Latest revision as of 13:49, 7 June 2011
DNA Computing PPT Concepts
Golden Gate HPP Davidson Concept: Media:GoldenGate_HPP.pptx
Golden Gate HPP MWSU Concept: Media:HPP_DNA_computer_MWSU_2011.pptx
Golden Gate Generic Primers: Media:ggsdiagram.pptx
Golden Gate Cre Primers: Media:PRIMERDESIGN.docx
Golden Gate Bla Primers: Media:primersforbla.docx
Golden Gate CAT Primers: Media:OLIGOSFORCATGENECONSTRUCTS.doc
DNA Computing Papers
Adleman 1994 First DNA computer, used to solve 7-node, 14-edge HPP
Benneson review 2009 Review of DNA computers in terms of Tiling systems, State Machines, Logic Networks.
Chen 1999 DNA Comuting Implementing Genetic Algorithms
ShapiroNature2004 DNA computer to analyze mRNA levels
Roweis stickers 1996 A sticker based model for DNA computation
Rothemund 2000 DNA computing by self-assembly
Benneson 2003 DNA computer using restriction and ligation
Boneh 1996 Review on the computational power of DNA
Adleman Scientific American Good introduction to Adleman HPP experiment
Adleman Data Encryption Standard 1999 Proposal to use the Sticker Model to attack the US Data Encryption Standard
[1] An overview of Biomolecular computing including a summary of DNA computing and a section on the limitations of such computing
[2] DNA computing in vitro and in vivo. An overview illustrating the differences between in vitro and in vivo DNA computing. 2001.
[3] The principle of the technique has been demonstrated experimentally for a simple example of the Hamiltonian path problem
Ravinderjit 2000 Using a gel based DNA computer to solve a 6-variable 11-clause 3-SAT problem
Molecular Computation by Hairpin Formation; Sakamoto et al.
2002 Adleman. Solution of a 20-Variable Problem on a DNA Computer.
2011 Shu DNA-Based Computing of Strategic Assignment Problems,
Criticism of DNA-Based Computing of Strategic Assignment Problems: http://arstechnica.com/science/news/2011/05/is-dna-computing-going-to-terminate-internet-banking.ars
2011 Qian Scaling Up Digital Circuit Computation with DNA Strand Displacement Cascades. 2011 and its commentary in Science. 2011 Reif
