Difference between revisions of "Protein of unknown function (DUF861) (Claudia M. Carcelen)"
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| − | =Protein of unknown function (DUF861) (Claudia M. Carcelen) [http://img.jgi.doe.gov/cgi-bin/geba/main.cgi?section=GeneDetail&page=geneDetail&gene_oid=644031442 644031442] | + | =Protein of unknown function (DUF861) (Claudia M. Carcelen) [http://img.jgi.doe.gov/cgi-bin/geba/main.cgi?section=GeneDetail&page=geneDetail&gene_oid=644031442 644031442]= |
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| + | =Blastn Search= | ||
| + | Megablast and blastn gave no results other than the source genome (''Halomicrobium mukohataei''). When I ran the blast searching for more dissimilar (discontiguous megablast), the results were not helpful - they were either complete genomes or not statistically significant. | ||
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| + | =Blastx Search= | ||
| + | This search provided a number of results, however many were hypothetical proteins. A number of results were cupin conserved barrel domain proteins, however I was unable to determine if any of these results were relevant. | ||
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| + | =GC Content= | ||
| + | The GC content for this gene is 70% and the GC content for our species' genome is 66%. These percentages are fairly similar, thus ruling out the possibility the possibility that this is an outside gene. There may however exist paralogs and orthologs to this gene. | ||
| + | |||
| + | =Genome Portal Results with Other Halophiles= | ||
Latest revision as of 03:03, 8 September 2009
Contents
Protein of unknown function (DUF861) (Claudia M. Carcelen) 644031442
Blastn Search
Megablast and blastn gave no results other than the source genome (Halomicrobium mukohataei). When I ran the blast searching for more dissimilar (discontiguous megablast), the results were not helpful - they were either complete genomes or not statistically significant.
Blastx Search
This search provided a number of results, however many were hypothetical proteins. A number of results were cupin conserved barrel domain proteins, however I was unable to determine if any of these results were relevant.
GC Content
The GC content for this gene is 70% and the GC content for our species' genome is 66%. These percentages are fairly similar, thus ruling out the possibility the possibility that this is an outside gene. There may however exist paralogs and orthologs to this gene.
