Difference between revisions of "Protein of unknown function ("
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| − | = | + | =Conserved hypothetical protein TIGR00162 [http://img.jgi.doe.gov/cgi-bin/geba/main.cgi?section=GeneDetail&page=geneDetail&gene_oid=644030738 644030738]= |
| − | = | + | =Blast= |
| − | Megablast | + | Megablast confirmed that the sequence is 100% identical to one in (''Halomicrobium mukohataei''). Blast also showed that the microbe (''Halorhabdus utahensis'') has a sequence that is 100% identical to this particular gene, and that (''Saccharopolyspora erythraea'') has two identified genes with sequences similar to those found within this sequence (shown below). |
| − | + | [[Image:Mr22.PNG]] | |
| − | |||
=GC Content= | =GC Content= | ||
The GC content for this gene is 70% and the GC content for our species' genome is 66%. These percentages are fairly similar, thus ruling out the possibility the possibility that this is an outside gene. There may however exist paralogs and orthologs to this gene. | The GC content for this gene is 70% and the GC content for our species' genome is 66%. These percentages are fairly similar, thus ruling out the possibility the possibility that this is an outside gene. There may however exist paralogs and orthologs to this gene. | ||
Latest revision as of 12:29, 8 September 2009
Conserved hypothetical protein TIGR00162 644030738
Blast
Megablast confirmed that the sequence is 100% identical to one in (Halomicrobium mukohataei). Blast also showed that the microbe (Halorhabdus utahensis) has a sequence that is 100% identical to this particular gene, and that (Saccharopolyspora erythraea) has two identified genes with sequences similar to those found within this sequence (shown below).
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GC Content
The GC content for this gene is 70% and the GC content for our species' genome is 66%. These percentages are fairly similar, thus ruling out the possibility the possibility that this is an outside gene. There may however exist paralogs and orthologs to this gene.
