Difference between revisions of "Web based genome comparison tool"
From GcatWiki
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**in C and Python | **in C and Python | ||
**Runs locally from command line??? => could generate on server. Too much work for server? | **Runs locally from command line??? => could generate on server. Too much work for server? | ||
| − | *[http://www.broadinstitute.org/annotation/medea/dotplot/ MEDEA] | + | *[http://www.broadinstitute.org/annotation/medea/dotplot/ Dotplot MEDEA] |
**This is what I want! | **This is what I want! | ||
**At its minimum, the MEDEA Dot Plot only needs JSON formatted data for the sequences and JSON formatted data for alignments. | **At its minimum, the MEDEA Dot Plot only needs JSON formatted data for the sequences and JSON formatted data for alignments. | ||
| − | *[http://www.broadinstitute.org/annotation/medea/stackmap/] | + | **Need to calculate alignments |
| + | ***http://www.fantascienza.net/leonardo/so/dotplot/dotplot.html | ||
| + | *[http://www.broadinstitute.org/annotation/medea/stackmap/ Multi MEDIA] | ||
**Multigenome comparison tool | **Multigenome comparison tool | ||
Revision as of 19:11, 20 September 2011
- JDotter
- A java based tool designed to compare whole genome
- Runs comparison operations locally
- Need a java install thing
- M-GCAT
- in C and Python
- Runs locally from command line??? => could generate on server. Too much work for server?
- Dotplot MEDEA
- This is what I want!
- At its minimum, the MEDEA Dot Plot only needs JSON formatted data for the sequences and JSON formatted data for alignments.
- Need to calculate alignments
- Multi MEDIA
- Multigenome comparison tool
