Difference between revisions of "Web based genome comparison tool"

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(For Computation)
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*[http://www.bx.psu.edu/miller_lab/dist/multiz-tba.012109.tar.gz TBA]
 
*[http://www.bx.psu.edu/miller_lab/dist/multiz-tba.012109.tar.gz TBA]
 
**[http://bio.cse.psu.edu/dist/tba.pdf documentation] and [http://bio.cse.psu.edu/dist/tba.pdf publication]
 
**[http://bio.cse.psu.edu/dist/tba.pdf documentation] and [http://bio.cse.psu.edu/dist/tba.pdf publication]
 +
*[http://mugsy.sourceforge.net/ MUGSY]

Revision as of 15:39, 22 September 2011

  • JDotter
    • A java based tool designed to compare whole genome
    • Runs comparison operations locally
    • Need a java install thing
  • M-GCAT
    • in C and Python
    • Runs locally from command line??? => could generate on server. Too much work for server?
  • Dotplot MEDEA
    • This is what I want!
    • At its minimum, the MEDEA Dot Plot only needs JSON formatted data for the sequences and JSON formatted data for alignments.
    • Need to calculate alignments
  • Multi MEDIA
    • Multigenome comparison tool

For Computation