Difference between revisions of "Web based genome comparison tool"

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*[http://www.broadinstitute.org/annotation/medea/stackmap/ Multi MEDIA]
 
*[http://www.broadinstitute.org/annotation/medea/stackmap/ Multi MEDIA]
 
**Multigenome comparison tool
 
**Multigenome comparison tool
 +
*[http://www.jalview.org/index.html Jalview]
 +
**Kinda like clustalW
  
 
==For Computation==
 
==For Computation==

Revision as of 16:07, 22 September 2011

  • JDotter
    • A java based tool designed to compare whole genome
    • Runs comparison operations locally
    • Need a java install thing
  • M-GCAT
    • in C and Python
    • Runs locally from command line??? => could generate on server. Too much work for server?
  • Dotplot MEDEA
    • This is what I want!
    • At its minimum, the MEDEA Dot Plot only needs JSON formatted data for the sequences and JSON formatted data for alignments.
    • Need to calculate alignments
  • Multi MEDIA
    • Multigenome comparison tool
  • Jalview
    • Kinda like clustalW

For Computation