Difference between revisions of "CRISPR-associated Proteins"
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'''After comparing the conserved proteins between our genome and the other 9 genomes, I found these cas-proteins were conserved:''' | '''After comparing the conserved proteins between our genome and the other 9 genomes, I found these cas-proteins were conserved:''' | ||
− | H. sinaiiensis shares all 6 cas-proteins with H. mukohataei. | + | H. sinaiiensis shares ''all 6 cas-proteins'' with H. mukohataei. |
− | H. vallismortis shares all cas-proteins except for Cas4. | + | H. vallismortis shares ''all cas-proteins except for Cas4.'' |
− | H. californiae shares all cas-proteins except for Cas4. | + | H. californiae shares ''all cas-proteins except for Cas4.'' |
− | H. denitrificans shares all 6 cas-proteins with H. mukohataei. | + | H. denitrificans shares ''all 6 cas-proteins'' with H. mukohataei. |
− | H. mediteranei shares all 6 cas-proteins with H. mukohataei. | + | H. mediteranei shares ''all 6 cas-proteins'' with H. mukohataei. |
− | H. volcanii shares only Cas2, Cas3 and Cas4 with H. mukohataei. | + | H. volcanii shares ''only Cas2, Cas3 and Cas4'' with H. mukohataei. |
− | H. sulfurifontis shares only Cas1, Cas3 and TM1800. | + | H. sulfurifontis shares ''only Cas1, Cas3 and TM1800''. |
− | H. mucosum shares all 6 cas-proteins with H. mukohataei. | + | H. mucosum shares ''all 6 cas-proteins'' with H. mukohataei. |
− | H. utahensis shares all 6 cas-proteins with H. mukohataei. | + | H. utahensis shares ''all 6 cas-proteins'' with H. mukohataei. |
Revision as of 17:05, 5 November 2009
RAST and JGI agree that our genome has 6 CRISPR-associated (cas) proteins:
1) Cas1
2) Cas2
3) Cas3(helicase)
4) Cas4a (RecB family exonuclease)
5) TM1800 family
6) TM1801 family
After comparing the conserved proteins between our genome and the other 9 genomes, I found these cas-proteins were conserved:
H. sinaiiensis shares all 6 cas-proteins with H. mukohataei.
H. vallismortis shares all cas-proteins except for Cas4.
H. californiae shares all cas-proteins except for Cas4.
H. denitrificans shares all 6 cas-proteins with H. mukohataei.
H. mediteranei shares all 6 cas-proteins with H. mukohataei.
H. volcanii shares only Cas2, Cas3 and Cas4 with H. mukohataei.
H. sulfurifontis shares only Cas1, Cas3 and TM1800.
H. mucosum shares all 6 cas-proteins with H. mukohataei.
H. utahensis shares all 6 cas-proteins with H. mukohataei.