Difference between revisions of "Fragment Purification"
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#Incubate 5 minutes at 50 C, vortexing 2 times along the way and at the end | #Incubate 5 minutes at 50 C, vortexing 2 times along the way and at the end | ||
#Transfer into a Nucleospin Extract II column on a collection tube and spin 1 minute at full speed | #Transfer into a Nucleospin Extract II column on a collection tube and spin 1 minute at full speed | ||
− | #Dump collection tube and add 700 ul buffer NT3 to column | + | #Dump collection tube and add 700 ul wash buffer NT3 to column |
#Spin 30 sec at full speed | #Spin 30 sec at full speed | ||
+ | #Repeat steps 8 and 9 | ||
+ | #Dump collection tube and add 250 ul wash buffer NT3 to column | ||
+ | #Spin 30 sec at full speed | ||
+ | #Repeat steps 11 and 12 | ||
+ | #Place a small tube of NE elution buffer in the 65 C water bath | ||
+ | #Dump the collection tube and spin the column at full speed for 1 minute | ||
+ | #At 15 ul heated NE elution buffer to the dry column and let stand 1 minute | ||
+ | #Spin full speed for 30 seconds | ||
+ | #Reapply the eluate onto the column and let stand 1 minute | ||
+ | #Spin full speed 30 seconds | ||
+ | #Measure concentration on Nanodrop |
Revision as of 17:46, 7 June 2010
Fragment Purification from an Agarose Gel
- Add 5X loading buffer to the restriction digest (eg. 40 ul digest + 10 ul 5X) and run on 1% Agarose gel
- With a plastic ruler, and wearing safety glasses, slice the band out of the gel on the UV box
- Weigh the gel slice (expect 100-250 mg)
- Use the Nucleospin Extract IIkit from Machery-Nagel
- Add 2 volumes of buffer NT
- Incubate 5 minutes at 50 C, vortexing 2 times along the way and at the end
- Transfer into a Nucleospin Extract II column on a collection tube and spin 1 minute at full speed
- Dump collection tube and add 700 ul wash buffer NT3 to column
- Spin 30 sec at full speed
- Repeat steps 8 and 9
- Dump collection tube and add 250 ul wash buffer NT3 to column
- Spin 30 sec at full speed
- Repeat steps 11 and 12
- Place a small tube of NE elution buffer in the 65 C water bath
- Dump the collection tube and spin the column at full speed for 1 minute
- At 15 ul heated NE elution buffer to the dry column and let stand 1 minute
- Spin full speed for 30 seconds
- Reapply the eluate onto the column and let stand 1 minute
- Spin full speed 30 seconds
- Measure concentration on Nanodrop