Difference between revisions of "Summer 2012 SynBio Project (Davidson and MWSU)"
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== Papers == | == Papers == | ||
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* '''DNA assembly for synthetic biology: from parts to pathways and beyond'''<br> | * '''DNA assembly for synthetic biology: from parts to pathways and beyond'''<br> | ||
[http://gcat.davidson.edu/mediawiki-1.15.0/images/c/ca/Synthetic_assembly_overview.pdf Tom Ellis, Tom Adieac and Geoff S. Baldwin] <br> | [http://gcat.davidson.edu/mediawiki-1.15.0/images/c/ca/Synthetic_assembly_overview.pdf Tom Ellis, Tom Adieac and Geoff S. Baldwin] <br> | ||
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*[http://www.jbioleng.org/content/pdf/1754-1611-5-12.pdf data sheets for standardized parts]. | *[http://www.jbioleng.org/content/pdf/1754-1611-5-12.pdf data sheets for standardized parts]. | ||
| + | |||
| + | * Everyone should watch this 5 minute video on [http://www.nature.com/nmeth/video/moy2010/index.html optogenetics]. Combine that video with the 2010 champoinship iGEM invention of [http://2010.igem.org/Team:Cambridge E. glowi]. | ||
| + | |||
| + | *'''DNA assembly for synthetic biology: from parts to pathways and beyond'''<br> | ||
| + | [http://gcat.davidson.edu/mediawiki-1.15.0/images/c/ca/Synthetic_assembly_overview.pdf Tom Ellis, Tom Adieac and Geoff S. Baldwin] <br> | ||
| + | Integr. Biol., 2011, 3, 109–118 | ||
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Colin Mcilswain <br> | Colin Mcilswain <br> | ||
Nature. Vol 465, page 867. | Nature. Vol 465, page 867. | ||
| + | |||
| + | * [http://www.jbioleng.org/content/5/1/9/ Word selection affects perceptions of synthetic biology.] Brianna Pearson, Sam Snell, Kyri Bye-Nagel, Scott Tonidandel, Laurie J Heyer, and A Malcolm Campbell. | ||
| + | |||
| + | * Read "Moral" ethics paper on synthetic biology. [[Media:Moral.pdf]] | ||
| + | |||
| + | * Read "Future" ethics paper on synthetic biology. [[Media:Future.pdf]] | ||
Revision as of 14:25, 17 May 2012
PPT Presentations
This PPT file contains all the slides from student presentations addressing the idea proposed by MWSU.
Media:Reports_on_Circuits.pptx
This PPT contains slides summarizing some of the best and most complicated papers from Week 11.
Media:Week_11.pptx
Papers
Methods Papers
- DNA assembly for synthetic biology: from parts to pathways and beyond
Tom Ellis, Tom Adieac and Geoff S. Baldwin
Integr. Biol., 2011, 3, 109–118
- Everyone should watch this 5 minute video on optogenetics. Combine that video with the 2010 champoinship iGEM invention of E. glowi.
- DNA assembly for synthetic biology: from parts to pathways and beyond
Tom Ellis, Tom Adieac and Geoff S. Baldwin
Integr. Biol., 2011, 3, 109–118
Older Lab Papers
- Engineering bacteria to solve the Burnt Pancake Problem.
Haynes, Karmella, et al.
Journal of Biological Engineering. Vol. 2(8): 1 – 12.
- Solving a Hamiltonian Path Problem with a Bacterial Computer.
Baumgardner, Jordan et al.
Journal of Biological Engineering. Vol. 3:11
- Bacterial Hash Function Using DNA-Based XOR Logic Reveals Unexpected Behavior of the LuxR Promoter.
Brianna Pearson*, Kin H. Lau* et al.
Interdisciplinary Bio Central. Vol. 3, article no. 10.
Time Delayed Growth Movie
Yang-Yu Liu, Jean-Jacques Slotine, & Albert-La ́szlo ́ Baraba ́si
Nature. 2011. Vol. 473, page 167.
Network Papers
Jonathan M. Raser and Erin K. O’Shea
Science. Vol. 309, page 2010
Nagarajan Nandagopal and Michael B. Elowitz
Science. Vol. 333, page 1244.
R. Milo, S. Shen-Orr, et al
Science. Vol. 298, page 824.
Ethics Papers
Colin Mcilswain
Nature. Vol 465, page 867.
- Word selection affects perceptions of synthetic biology. Brianna Pearson, Sam Snell, Kyri Bye-Nagel, Scott Tonidandel, Laurie J Heyer, and A Malcolm Campbell.
- Read "Moral" ethics paper on synthetic biology. Media:Moral.pdf
- Read "Future" ethics paper on synthetic biology. Media:Future.pdf
