Difference between revisions of "DM Notes 2.11.16"
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*Team 3 Work with DESeq manual | *Team 3 Work with DESeq manual | ||
*Team 4 My team (Dylan, Dustin, Nick B, Saipriya): try to download GO terms and connect our gene names to those terms. Come up with list of GO terms for every gene. | *Team 4 My team (Dylan, Dustin, Nick B, Saipriya): try to download GO terms and connect our gene names to those terms. Come up with list of GO terms for every gene. | ||
+ | *Dr C Using R at the Bench book, looking for any helpful notes | ||
− | + | Process so far: looking for Burmese python GAF in GO database, haven't found any previous annotations. | |
+ | *Pull organism GAF from GO database (Saipriya and I pulled the organism names. There are 443 different ones, though some are viruses, fungi, bacteria, etc.) The organisms GO has account for ~75% of the genes in our file. | ||
+ | *Pull gene names for each organism from contig file and associate those w/ the GAF GO ID#s | ||
+ | *Associate GO IDs with terms | ||
Back to home [[Dylan Maghini]] | Back to home [[Dylan Maghini]] |
Latest revision as of 19:54, 11 February 2016
Today's tasks: Team up.
- Team 1 Blast2GO - get genes mapped to GO terms.
- Team 2 DAVID
- Team 3 Work with DESeq manual
- Team 4 My team (Dylan, Dustin, Nick B, Saipriya): try to download GO terms and connect our gene names to those terms. Come up with list of GO terms for every gene.
- Dr C Using R at the Bench book, looking for any helpful notes
Process so far: looking for Burmese python GAF in GO database, haven't found any previous annotations.
- Pull organism GAF from GO database (Saipriya and I pulled the organism names. There are 443 different ones, though some are viruses, fungi, bacteria, etc.) The organisms GO has account for ~75% of the genes in our file.
- Pull gene names for each organism from contig file and associate those w/ the GAF GO ID#s
- Associate GO IDs with terms
Back to home Dylan Maghini