Difference between revisions of "Notes 2/16/16"

Revision as of 19:55, 16 February 2016

Looking for housekeeping intestine genes so that we can make sure our samples are accurate

over-expressed sequences match:

Snake 1: matches with an mRNA sequence from an intestine sample of an elephant fish

Snake 2: SLC15A1

Snake 3:

Snake 4: SLC6A19

Snake 5: SLC15A1

Snake 6:

Housekeeping genes

BOAT1 (SLC6A19) solute carrier family 6 (neutral amino acid transporter), member 19, mRNA (housekeeping gene BOAT1) found in intestine and kidney

ASCT2 (SLC1A5) expressed in the kidney but expression is high in the jejunum and colon but lower in duodenum and ileum

SLC15A1 protein coding gene: encodes an intestinal hydrogen peptide cotransporter that is a member of the solute carrier family 15.

@@ Line 1: / Line 1: @@
 Looking for housekeeping intestine genes so that we can make sure our samples are accurate
+over-expressed sequences match:
-Snake 1: one of its most expressed sequences matches with an mRNA sequence from an intestine sample of an elephant fish
+Snake 1:  matches with an mRNA sequence from an intestine sample of an elephant fish
-Snake 2:
+Snake 2: SLC15A1
 Snake 3:
-Snake 4: solute carrier family 6 (neutral amino acid transporter), member 19 (SLC6A19), mRNA (housekeeping gene BOAT1) found in intestine and kidney
+Snake 4: SLC6A19
-Snake 5:
+Snake 5: SLC15A1
 Snake 6:
-Housekeeping genes
+'''Housekeeping genes'''
-BOAT1 (SLC6A19)
+BOAT1 (SLC6A19) solute carrier family 6 (neutral amino acid transporter), member 19, mRNA (housekeeping gene BOAT1) found in intestine and kidney
+ASCT2 (SLC1A5) expressed in the kidney but expression is high in the jejunum and colon but lower in duodenum and ileum
+SLC15A1 protein coding gene: encodes an ''intestinal'' hydrogen peptide cotransporter that is a member of the solute carrier family 15.