Difference between revisions of "DM Notes 2.18.16"
From GcatWiki
(Created page with " Back to home Dylan Maghini") |
|||
| Line 1: | Line 1: | ||
| + | '''Dr. Campbell and Dr. Heyer's Progress:''' Looking at heat map. They had been trying to adjust so that Euclidean distance isn't what determines correlation (can be different magnitudes, but still correlated). Now it's measured by correlation. | ||
| − | + | *Got rid of scale, but gave it absolute values. Yields about 2 horizontal rows (blue figure). | |
| + | *But, when they eliminated Euclidean distance, first attempt yielded large red box with two rows showing other coloring. Changed coloring to see on normalized scale. p <=.01 | ||
| + | *Code results are online under 2.18 (Dr. C and Dr. H results). The code makes CSVs with gene names. Working on 'if I select one gene, what genes are closely related to that one?' CSV has 28 genes. | ||
| + | *Contigs on that list are good candidates to pursue further. | ||
Back to home [[Dylan Maghini]] | Back to home [[Dylan Maghini]] | ||
Revision as of 18:48, 18 February 2016
Dr. Campbell and Dr. Heyer's Progress: Looking at heat map. They had been trying to adjust so that Euclidean distance isn't what determines correlation (can be different magnitudes, but still correlated). Now it's measured by correlation.
- Got rid of scale, but gave it absolute values. Yields about 2 horizontal rows (blue figure).
- But, when they eliminated Euclidean distance, first attempt yielded large red box with two rows showing other coloring. Changed coloring to see on normalized scale. p <=.01
- Code results are online under 2.18 (Dr. C and Dr. H results). The code makes CSVs with gene names. Working on 'if I select one gene, what genes are closely related to that one?' CSV has 28 genes.
- Contigs on that list are good candidates to pursue further.
Back to home Dylan Maghini
