Difference between revisions of "Notes 2/16/16"
| Line 3: | Line 3: | ||
over-expressed sequences match: | over-expressed sequences match: | ||
| − | Snake 1: matches with an mRNA sequence from an intestine sample of an elephant fish | + | Snake 1: matches with an mRNA sequence from an intestine sample of an elephant fish, SLC15A1, SLC6A19 |
Snake 2: SLC15A1 | Snake 2: SLC15A1 | ||
| − | Snake 3: | + | Snake 3: SLC15A1, SLC6A19, (SLC1A5 very very low expression, might just mean that duodenum or ileum) |
| − | Snake 4: SLC6A19 | + | Snake 4: SLC6A19, SLC15A1, (SLC1A5 very low expression) |
Snake 5: SLC15A1 | Snake 5: SLC15A1 | ||
Revision as of 19:05, 18 February 2016
Looking for housekeeping intestine genes so that we can make sure our samples are accurate
over-expressed sequences match:
Snake 1: matches with an mRNA sequence from an intestine sample of an elephant fish, SLC15A1, SLC6A19
Snake 2: SLC15A1
Snake 3: SLC15A1, SLC6A19, (SLC1A5 very very low expression, might just mean that duodenum or ileum)
Snake 4: SLC6A19, SLC15A1, (SLC1A5 very low expression)
Snake 5: SLC15A1
Snake 6:
Housekeeping genes
BOAT1 (SLC6A19) solute carrier family 6 (neutral amino acid transporter), member 19, mRNA (housekeeping gene BOAT1) found in intestine and kidney
ASCT2 (SLC1A5) expressed in the kidney but expression is high in the jejunum and colon but lower in duodenum and ileum
SLC15A1 protein coding gene: encodes an intestinal hydrogen peptide cotransporter that is a member of the solute carrier family 15.
