Difference between revisions of "Notes 2/23/16"
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'''Genes of Possible Interest''' | '''Genes of Possible Interest''' | ||
*Contig1_DNPEP_Aspartyl_aminopeptidase_Homo_sapiens | *Contig1_DNPEP_Aspartyl_aminopeptidase_Homo_sapiens | ||
| + | ** using this as a gene of interest created a cluster of 4550, showed increased activity in fed with somewhat decreased in nonfed | ||
| + | ** from this found next gene of interest that had ~2500 expression in fed ~1500 in non-fed | ||
| + | *Contig2969_KRT18_Keratin,_type_I_cytoskeletal_18_Homo_sapiens | ||
Latest revision as of 19:21, 23 February 2016
Class Notes FPKM-->should be entering .expected_count Dr. Heyer finished code to get supervised clustering, larger data set is not really graphing, Dr. Heyer set up a way to filter out if row for gene if average of six genes is greater than 10
work on ways to get program to work, looking at different genes of interest and clustering genes that are similar to those
Genes of Possible Interest
- Contig1_DNPEP_Aspartyl_aminopeptidase_Homo_sapiens
- using this as a gene of interest created a cluster of 4550, showed increased activity in fed with somewhat decreased in nonfed
- from this found next gene of interest that had ~2500 expression in fed ~1500 in non-fed
- Contig2969_KRT18_Keratin,_type_I_cytoskeletal_18_Homo_sapiens
