Difference between revisions of "March 10, 2016"
From GcatWiki
| Line 1: | Line 1: | ||
Plan for presentation: | Plan for presentation: | ||
| + | *Look for interesting genes in overrepresented gene blast. | ||
| + | *Didn't find anything interesting in the paper. | ||
| + | *Correlation clustering. | ||
| + | *Cross-reference genes with Castoe | ||
| + | *Back to heat map for where to start. The following genes on the heat map looked the most distinct: | ||
| + | Contig 8459- appears on both lists | ||
| + | Contig 1862* | ||
| + | Contig 445* | ||
| + | **inhibits ATPase when mitochondrial membrane potential falls below threshold. Required to avoid cellular consumption of ATP | ||
| + | asterics is unique to our list of 40. The contig numbers corespond to our list of genes from correlation! Google the exciting genes. | ||
| + | LOOK AT SLIDESHOW TO COMPLETE NOTES AND WRITE RESPONSE | ||
| + | |||
| + | Follow the genes only on our list path, cross reference again with the heat map to find the genes most differentially expressed on this list, research function | ||
| + | |||
| + | We are following two different ideas, look at genes that are the most differentially expressed | ||
| + | |||
| + | Codes ",marigns = c(10,10)) | ||
Latest revision as of 19:45, 10 March 2016
Plan for presentation:
- Look for interesting genes in overrepresented gene blast.
- Didn't find anything interesting in the paper.
- Correlation clustering.
- Cross-reference genes with Castoe
- Back to heat map for where to start. The following genes on the heat map looked the most distinct:
Contig 8459- appears on both lists Contig 1862* Contig 445*
- inhibits ATPase when mitochondrial membrane potential falls below threshold. Required to avoid cellular consumption of ATP
asterics is unique to our list of 40. The contig numbers corespond to our list of genes from correlation! Google the exciting genes. LOOK AT SLIDESHOW TO COMPLETE NOTES AND WRITE RESPONSE
Follow the genes only on our list path, cross reference again with the heat map to find the genes most differentially expressed on this list, research function
We are following two different ideas, look at genes that are the most differentially expressed
Codes ",marigns = c(10,10))
