Difference between revisions of "JP Mar 17 16"
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Wrote our first status report after our oral presentation on the 15th. | Wrote our first status report after our oral presentation on the 15th. | ||
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GO Slim: | GO Slim: | ||
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Resource: | Resource: | ||
| − | Map2Slim option in OWLTools: "Given a GO slim file, and a current ontology (in one or more files), the Map2Slim script will map a gene association file (containing annotations to the full GO) to the terms in the GO slim. | + | Map2Slim option in OWLTools: "Given a GO slim file, and a current ontology (in one or more files), the Map2Slim script will map a gene association file (containing annotations to the full GO) to the terms in the GO slim. |
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| + | *this doesn't work on school computers | ||
http://geneontology.org/page/go-slim-and-subset-guide | http://geneontology.org/page/go-slim-and-subset-guide | ||
Revision as of 17:59, 17 March 2016
Wrote our first status report after our oral presentation on the 15th.
GO Slim:
Want to map the whole transcriptome (relative expressions?) GO Slim terms and compare to gene of interest (relative expression?) GO Slim terms.
Resource:
Map2Slim option in OWLTools: "Given a GO slim file, and a current ontology (in one or more files), the Map2Slim script will map a gene association file (containing annotations to the full GO) to the terms in the GO slim.
- this doesn't work on school computers
