Difference between revisions of "Divide and Conquer Biological Challenges"

Revision as of 15:23, 29 May 2008

* We need to get the Lux/AHL system working.

• LuxI
  
• LuxR
  
• lux pR
  

* We need to get the Lsr/AI-2 system working.

Our summary of the Lsr system: Davidson/Missouri_Western_iGEM2008#Lsr_.28AI-2.29_cell_signaling_system

• There are NO Lsr parts in the registry:
  
• We will need to make BB parts for:
  

1. LsrR and LsrK which are adjacent to each other in the E. coli genome. We could amplify them together with a total size of over 2600bp.
2. Lsr promoter
3. LuxS that produces DPD that somehow is converted to R-THMF.
4. How do we get cells to make AI-2?

* We do NOT need to use additional chemical input signals (e.g., aTc and IPTG). We will use only AHL and AI-2 added exogenously.

* We need to have an XOR logic gate produced.

Existing Logic Gates

• NOT:
  

1. I732205 (NOT/ Dual-repressed NOR)

• AND:
  

Existing But Complex

Simple But Hypothetical
We would need to have:

1. Starts with pTetR
2. over production of LacI^Q repressor but note this link is plain LacI
3. over production of TetR repressor
   

• NAND:
  

1. I732914

• NOR:
  

1. I732916
   
2. I732917\
   

• Inverters:
  

Self-Contained Inverters

1. J23040 (AHL-dependent inverter)
   

PoPS Output Inverters

1. Q04121 (lac inverter)
   
2. Q04400 (tet inverter)
   

* We need to figure out how to get cells to communicate in a sequence and not stop growing too soon.

• What if Amp^R is secreted and cells are not Amp^R? This would prevent cells down the chain from responding too soon.