Difference between revisions of "Missing tRNA-trp gene found"
| Line 6: | Line 6: | ||
ACTGATATACTGAGCGACCGGCTGATCACCGGACGCCTTGATGACCCTCTGGAGTTCCGAGGCGCA<br> | ACTGATATACTGAGCGACCGGCTGATCACCGGACGCCTTGATGACCCTCTGGAGTTCCGAGGCGCA<br> | ||
ACCGGAGATATCAGTCGATCGGGAGTTCAAATCTCTCCGACCCCA<br> | ACCGGAGATATCAGTCGATCGGGAGTTCAAATCTCTCCGACCCCA<br> | ||
| + | <br> | ||
| + | 5' exon: 36 bp, position 1-36<br> | ||
| + | intron: 104 bp, position 37-140<br> | ||
| + | 3' exon: 36 bp, position 141-176<br> | ||
<br> | <br> | ||
Evidence:<br> | Evidence:<br> | ||
Revision as of 00:31, 14 October 2008
tRNA-trp-CCA:
DNA Coordinates: 465601..465777 (-)
GGGGTCGTGGCCAAGTCCGGCATGGCGACTGACTCCAGAGGCACCGCGCCCGGGACGACACTCCAG
ACTGATATACTGAGCGACCGGCTGATCACCGGACGCCTTGATGACCCTCTGGAGTTCCGAGGCGCA
ACCGGAGATATCAGTCGATCGGGAGTTCAAATCTCTCCGACCCCA
5' exon: 36 bp, position 1-36
intron: 104 bp, position 37-140
3' exon: 36 bp, position 141-176
Evidence:
Similarity with Haloferax volcanii tRNA-trp
Score = 190 bits (96), Expect = 2e-49
Identities = 155/172 (90%), Gaps = 2/172 (1%)
Similarity with Halobacterium salinarum R1 tRNA-trp
Score = 174 bits (88), Expect = 1e-44
Identities = 154/172 (89%), Gaps = 3/172 (1%)
Similarity with Haloarcula marismortui tRNA-trp
Score = 163 bits (82), Expect = 4e-41
Identities = 159/181 (87%), Gaps = 4/181 (2%)
Similarity with Natronomonas pharaonis tRNA-trp
Score = 163 bits (82), Expect = 4e-41
Identities = 159/181 (87%), Gaps = 4/181 (2%)
[1]: "A tRNA-trp Intron Endonuclease from Halobacterium volcanii"
(I was unable to upload the .pdf for this paper, you can download it at this site)
