Difference between revisions of "Amino acids"
| Line 12: | Line 12: | ||
<br> | <br> | ||
'''G = glycine'''<br> | '''G = glycine'''<br> | ||
| − | + | Appears to be missing EC numbers 2.6.1.44 and 1.4.4.2. The RAST spreadsheet calls 2.6.1.44. | |
<br> | <br> | ||
'''H = histidine'''<br> | '''H = histidine'''<br> | ||
| + | Appears to be complete. | ||
<br> | <br> | ||
'''I = isoleucine'''<br> | '''I = isoleucine'''<br> | ||
Revision as of 15:23, 6 November 2008
A = alanine
The RAST KEGG viewer says there is no way to convert between pyruvate and alanine, however, the RAST spreadsheet calls enzyme 2.6.1.44
(an alanine-glyoxylate aminotransferase).
C = cysteine
D = aspartic acid
E = glutamic acid
F = phenylalanine
G = glycine
Appears to be missing EC numbers 2.6.1.44 and 1.4.4.2. The RAST spreadsheet calls 2.6.1.44.
H = histidine
Appears to be complete.
I = isoleucine
K = lysine
L = leucine
M = methionine
N = asparagine
Our organism appears to have no enzyme that makes L-aasparagine from L-aspartate (asparaginases). On the RAST spreadsheet, however, RAST calls an "asparagine family protein" in bps from 1139281-1140141.
P = proline
Q = glutamine
Appears to be fairly complete when compared with Haloarcula marismortui, with exceptions being a missing NAD synthase (EC 6.3.5.1), a carbamoyl-phosphate synthetase (EC 6.3.4.16).
R = arginine
S = serine
Matches Haloarcula marismortui, except in RAST KEGG diagram, it appears to be missing enzyme 2.7.8.8, which is a CDP-diacylglycerol-serine O-phosphatidyltransferase. However, according to the RAST spreadsheet, there is a CDP-diacylglycerol-serine O-phosphatidyltransferase from bps 1440328-1439621.
T = threonine
Appears to be complete.
V = valine
W = tryptophan
Y = tyrosine
